Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00729 ATGAGCAGATCTCCTTCTTTCTTGGCGAAGTCAGATCAAACTCCGACTCTTCACTCTGAATCTCTGCATAAATGGGTTGTAGCTTTTTGTATAATTAGATTTGATCTCGAACAGGGTCAGCTGATCGAAGAGTGCTATCCATCAGGCTGTGTAACACAAGATGAGGAACTTGAAATTGCATTCAGTTCATTCCCAGATTCTGTTTCCCAGCATCAGAACCGTTCTAGCATTCATGACTGCATCTTCTTTTTCCGGTTCCGGAGGCGGGAGAACTCCAATGCCAGCAATGTCTCATCAAACAAAATTAATGAAGGGGATGAGGAGTTATCTTCCATTTCCACCGACTTAAAAGGTCTTGGCAATATGTCCAGTGTTTCTAAATATATGTACGGTTATGTATTTAACCGGCAGAGACACGACGAGAGACTAAGGAGAGGTGGAGAGCAGAAATCTGTGGTAATTTTATCCCATAATCCTTATTCAAGTGTATTTAAACCTTTGCTTCAAATTCTGGGTCCTTTATATTTTGACATTGGAAGAAAGGCTCTTGAACATATTGCCGCTTATGTATCGACATGGCCTTCTCCAGTCCCTGGTAAGTCAATGGAGCTTCCAATTGGGAATGCAGTCCTTAAAGTGAATTTGCCACCAGCTTATAGTTTACCAGTGGAAAGTGACACATTCCTGGAAGATTCTTTGCCTTCCATAGCTCCTTTACTGCCCAGTAATATATCTGTACCTCTCGGTCTTTTCCACGATGCAGATCTTTTTGGTTCATTTCGAGGCCTTTTATTGCAACTCTGGGAGTTGTGGGAGCTGTTACTTATTGGGGAGCCAATTCTTGTTATTGCTCCAACGCCTCCGCAGTGTTGTGAGGCTGTAGCTGGCCTTGTTAGTTTGGTTGCTCCTCTACTTTATAGTGTTGATTATCGACCTTATTTCACCATCCATGACCCTGAGTTTGCCCACTTAAATTCGCTTCATGAAGGAGATATTTTTCCTTCTATGGTTTTGGGTGTGACAAACCTCTTCTTTCTTAAAGCTCTTCGGAATATTCCCCATGTTGTTTCGGTTGGAAGTCCTGCTGCTAATTCAAATCGAGCCGCCATCACTTCCAGAACAATAACCGGAAGAGTTTCTGGTAGACCTGAATTGCCTGGTCTTCCAAAACTTTCATTGAAGAAGTTTTCCCCTTCGAGCTTTCTAAATGCAATGAAAATGAGGAGAGATGGGCCGCTGTGCCTCATGACGGAACATAAGGAAGCCCTTTGGAGCACATATGCTGCAACAACAAAGCCTGACACTTCTATCTTGAATAGGCTTATTGATGCTGGGATGTCACTGAGGGTTGAGGAGTCCATGTCGGTTGTTAATAACGAGATATTGCGAAGACATTTTTTGGAACTAACGACCAACTTTTTGGCACCTTTTGGCCCATATTTTAGGACTATCACCCCATCTGAAGGATCTTCTCCATTTGACGATCCTCCTTCTCTCCCCCCATTTAGTGCTGATGAATTTATTGCAACCTTATCTATGAGGGGCCCGGGGAAGTTTTTATCAAAGAGGATGAAATCGAACTGGCTGGATCTCTATAGGCGATTTCTCAATGGACCCAATTTTATGCCATGGTTCAAGAGAAGGGCTGCTGTTGCTGAACAAGAACAACTTAAAGTCTGGAAGCAGGCTAGAATGAATGCTGACATACAGCTGATGACGTCAAAAATGTCTGAATTGGAAATCGTTGATTTCTTCAATGCTGTCGAACAGCATCTTCTCAAAGAAATACAGCTATGGCGGCACTACCTGGAAGGAAACTTTTTCATTATACAGACAGACCATCAGTCGCTTAAATACCTCTTAGAGCAGCGAATTATGACACCGCTGCAACAGAAGTGGTTAACCAAGCTCCTGGGATTAAACTACCAAATCGAGTATAAACAGGGCAAGTTTAATGTCGTCGCCGACGCCCTTTCCCGTGAAACCTCCAATTTTCCGGCGGCTCCCTCCCATTGCCAAGCTCTGTCAGTTCTTACCCCGACCTGGATAAAGGAGGCCATCTCGAGCTATGAAGGCAACACTATACGACAGCAGGTCCTCAAAACTCTACACGACTCTGTTGAGGGAGGTCATTCGGGCGTCCAAGCGACCCTCCACCGAGCAAAATCACTTTTTTGGTGGCCGGGCCTATCCTCAGACGTTCATGCCTATGTCCGAGGGTGCGACATTTGCCAACGCTGCAAACACGAGCATGTCCAGTATCCCGGGCTTCTCCAGCCACTCCCCATTCCCCAGCATCCGTGGACCCATATCGCCATGGACTTTATCGAAGGCCTTCCCAACTCCCTCAATTCCAACTGCATTCTGGTAGTGATTGATCGCTTCACAAAATATGCCCATTTTCTGGCGCTCCGACATCCCTTTACGGCCATTCAGGTTGCAAATACCTTCCTGGACAACGTCTTCAAGCTTCACGGAATGCCACAGGCAATAGTTTCCGACAGGGACCCAATCTTCTTGTCCAATTTCTGGCAATCCCTGTTCTCTTCCTTAGGGATGGATCTTACCACCTCATCCAGCTACCACCTGGAGACCGACGGCCAGACGGAGCCTCTATATGGAACCTCTCCACCCCGCCTGACCATAGGGCAATACCAACACTCCGAATCTGCAGCGGCCGGAAACTTCCTACAGGATCGTCATACAATGAATAGGCTCCTCAAAGACAACATTACCATAGCCCAACACCGCATGAAGCAGTACACTGATCGCCACCGTACTGAGAGAACATTCCAAACTGGCGACTTCGTGTTCCTAAAGCTCCAACCATACCGCCAACAATCTGTCTCCTCTCGTAGCTCACATAAGCTTTCCCCGAAATATTTTGGCCCATTCCAGGTACTCAATCGTGTCGGTTCCGTTGCTTACAGACTACAGTTACCGGCCGGATCACGCATCCACCCTGTTTTTCATGTCTCCCTTTTGAAATAA 2991 46.0 MSRSPSFLAKSDQTPTLHSESLHKWVVAFCIIRFDLEQGQLIEECYPSGCVTQDEELEIAFSSFPDSVSQHQNRSSIHDCIFFFRFRRRENSNASNVSSNKINEGDEELSSISTDLKGLGNMSSVSKYMYGYVFNRQRHDERLRRGGEQKSVVILSHNPYSSVFKPLLQILGPLYFDIGRKALEHIAAYVSTWPSPVPGKSMELPIGNAVLKVNLPPAYSLPVESDTFLEDSLPSIAPLLPSNISVPLGLFHDADLFGSFRGLLLQLWELWELLLIGEPILVIAPTPPQCCEAVAGLVSLVAPLLYSVDYRPYFTIHDPEFAHLNSLHEGDIFPSMVLGVTNLFFLKALRNIPHVVSVGSPAANSNRAAITSRTITGRVSGRPELPGLPKLSLKKFSPSSFLNAMKMRRDGPLCLMTEHKEALWSTYAATTKPDTSILNRLIDAGMSLRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRTITPSEGSSPFDDPPSLPPFSADEFIATLSMRGPGKFLSKRMKSNWLDLYRRFLNGPNFMPWFKRRAAVAEQEQLKVWKQARMNADIQLMTSKMSELEIVDFFNAVEQHLLKEIQLWRHYLEGNFFIIQTDHQSLKYLLEQRIMTPLQQKWLTKLLGLNYQIEYKQGKFNVVADALSRETSNFPAAPSHCQALSVLTPTWIKEAISSYEGNTIRQQVLKTLHDSVEGGHSGVQATLHRAKSLFWWPGLSSDVHAYVRGCDICQRCKHEHVQYPGLLQPLPIPQHPWTHIAMDFIEGLPNSLNSNCILVVIDRFTKYAHFLALRHPFTAIQVANTFLDNVFKLHGMPQAIVSDRDPIFLSNFWQSLFSSLGMDLTTSSSYHLETDGQTEPLYGTSPPRLTIGQYQHSESAAAGNFLQDRHTMNRLLKDNITIAQHRMKQYTDRHRTERTFQTGDFVFLKLQPYRQQSVSSRSSHKLSPKYFGPFQVLNRVGSVAYRLQLPAGSRIHPVFHVSLLK 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13824702 13837674 - Bpe021573.1 Bpe07g00729 106498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00729 996 ProSiteProfiles Tripartite DENN domain profile. 27 547 IPR037516 -
Bpe07g00729 996 SUPERFAMILY Ribonuclease H-like 760 881 IPR012337 -
Bpe07g00729 996 Pfam Integrase zinc binding domain 694 749 IPR041588 -
Bpe07g00729 996 PANTHER UNCHARACTERIZED 1 611 IPR024224 GO:0005085
Bpe07g00729 996 PANTHER LD41638P 1 611 - -
Bpe07g00729 996 SUPERFAMILY DNA/RNA polymerases 593 647 IPR043502 -
Bpe07g00729 996 Gene3D - 685 747 - -
Bpe07g00729 996 Pfam Stabilization of polarity axis 263 352 - -
Bpe07g00729 996 Gene3D - 758 925 IPR036397 GO:0003676
Bpe07g00729 996 CDD RNase_HI_RT_Ty3 599 660 - -
Bpe07g00729 996 Pfam RNase H-like domain found in reverse transcriptase 596 637 IPR041373 -
Bpe07g00729 996 ProSiteProfiles Integrase catalytic domain profile. 763 931 IPR001584 GO:0015074
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00729 - - - mnt:21402011 924.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00729 Bpe-Chr7:13824702 Bpe14g00001 Bpe-Chr14:278 2.42E-11 dispersed
Bpe03g00029 Bpe-Chr3:507118 Bpe07g00729 Bpe-Chr7:13824702 1.14E-08 transposed
Bpe03g00369 Bpe-Chr3:9883028 Bpe07g00729 Bpe-Chr7:13824702 4.81E-07 transposed
Bpe04g01291 Bpe-Chr4:19186438 Bpe07g00729 Bpe-Chr7:13824702 4.17E-12 transposed
Bpe05g00382 Bpe-Chr5:18017529 Bpe07g00729 Bpe-Chr7:13824702 2.17E-08 transposed
Bpe07g00041 Bpe-Chr7:347340 Bpe07g00729 Bpe-Chr7:13824702 7.83E-12 transposed
Bpe08g00805 Bpe-Chr8:10060588 Bpe07g00729 Bpe-Chr7:13824702 1.98E-10 transposed
Bpe10g00317 Bpe-Chr10:10682324 Bpe07g00729 Bpe-Chr7:13824702 5.98E-07 transposed
Bpe11g00243 Bpe-Chr11:1665215 Bpe07g00729 Bpe-Chr7:13824702 9.86E-17 transposed
Bpe15g00016 Bpe-Chr15:1821237 Bpe07g00729 Bpe-Chr7:13824702 9.89E-09 transposed
Bpe03g00684 Bpe-Chr3:26983521 Bpe07g00729 Bpe-Chr7:13824702 9.90E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g361 . . Bda06g00489 Bda15g00657 . . . Bma12g00939 . . Cma10g00247 Cma11g00259 Car10g00234 Car11g00237 . . Cpe04g01415 . . . . . . . Cla06g01483 Cam06g1638 . Cco06g1696 Clacu06g1604 Cmu06g1553 . . . Cone13ag0298 Cone19ag0267 . . . . . Blo15g00367 . . Bpe07g00729 . . . . Cmo10g00267 Cmo11g00265 . . . . . Cpe18g00745 . . . . . . . . . . . . . . . Csa01g00365 . Cme02g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006560 1 1 1 2 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00729 Bpe_Chr07 FPKM 9.198849 7.414728 7.182136 6.590555 11.584924 9.424485 11.335827 12.485119 10.049072 12.687896