Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00755 ATGGCGAAGACTGCGACCCCAGGTGGAATTTTGAAGATTCAGGCTGATCCAACGCCGGAATCGTCCTCGGAAGTCTCGGATTTAGTGCTTCAGGTCCTCGATCTTAAAGCCACGGGGAATCGTTACATGCTTACTGCCAGCGATGGAACTATGAAGTTGAAAGCTATTCTACCGTCGAATCTCACTTCCGAGGTGATCTCAGGGAAGATTCAGAATCTAGGTCTTATTCGCATTCTTCATTATTCCCTCAATGACATCCCAAACAAGTCGGAGAAGTATATGATTGTGACTAAATGCGAGGTTGTTTCTCCTGCTCTTGAAATGGAGATTAAGAACGTAGTCAAAAGCGATGAATCTGAATTGTTTCTGACACCAAAACGAGAAAATGACTTTGAGAGTGAAGTGAAAGGAGAAAAAACAGGGATTCTTCTAAAGCCAAAGCCTGAAATGTTTGCAAAATCAGCGGCTCAAATTGTAAATGAACAAAGATCAAACTTGGCCCCAACTGCACGAATGGCCATGACAAGGAGAGTTCATCCTCTTCTTTCATTGAATCCCTACCAAGGCAATTGGACAATTAAAGTTCGTGTTACGAATAAGGAAGCTATGCGTTATTACAAGAATGCCAGGGGAGAAGGATGTGTCTTCAATATCGAATTGACTGATGATGATGAAACCCAAATACAGGCAACAATGTTCAATGAAGCTGCTAGAAAGTTTTATGATAAATTTGAGCTTGGAAAGGTTTATTACATTTCAAAGGGAACTCTAAAGGTTGCTAACAAGAAATTCAGTACAGTGAAAAATGATTATGAAATGACTTTGAATGAGAATTCAGAGGTGGAAGAGGCTATCAACGAAGCTACTTTTGTGCCTGTGACGAAATTCAATTTTGTCCCAATTGATATGTTGGGTCCTTACGTGAATGGAAAAGAACTTGTTGATGTTATTGGAGTGGTTCAAAATGTTTCCCCTGCAATCAGTATTCGAAGGAAGATCAATAATGAAACTGCTCCGAAGCGTGAAATAACTATTGCTGATGAGACGAAAAAAACAGTTGCAGTCTCACTATGGAATGTGCTCGCAACTAATGTGGGGCAGGAGTTACTCGACATGGTGGATCAATCACCCGTAATTGCAATTAAGTCTCTTAAAGTTGGAGATTTTCAAGGTGTATCTCTTTCATCAGTGAGTAAAAGCAAATTGCTAGTAAATCCAGACATACCCGAGGCAAAAAAGTTAAAATTATGGTTTGATTCTGAAGGCAAAGGAATATCAATGGCGTCAGTTGGCTCTAGTTTGGGTGCATCATCCAAGAATGGAGGAAGGTCTATGTATTCTGATCGGACATCTTTGTCTTACATAATCCAAAACCCATCATTAGGGGATGATAAGCCGATGTTCTTCAGCATTAAAGCATATATTAGCTCCATCAAACCTGATCAGACTATGTGGTACCGAGCTTGCAAGACTTGCAACAAGAAGGTGACTGAGGCTATAGGTTCTGGATTTTGGTGTGAAGGTTGCCAGAAAAGTGATGGAGAATGCAGTTTAAGATACATAATGGTAGTTAGAATTTCTGATGCCAGCGGCGAAGTCTATCTCTCTCTCTTCAATGACGAGGCAGAAACAATCATTGGATGCACAGCTGATGAGCTTGACAAAATGAAATCACAAATTGATGAAGAGAATTCATATGAGATGAAATTGAAAGAGGCTACTTGGGTTCCTTATCTATTTAGAGTAAGCGTTTCTCAGAATGAATACAACAATGAGAAGAGGCAGAGGATTACTGCCAGAGCTGTTGCTCCTGTCGATTTTGCTTCTGAATCCAGACTCTTGCTTGAAGAAATCTCAAGTTCAAGAATCTCAAAATGA 1878 40.2 MAKTATPGGILKIQADPTPESSSEVSDLVLQVLDLKATGNRYMLTASDGTMKLKAILPSNLTSEVISGKIQNLGLIRILHYSLNDIPNKSEKYMIVTKCEVVSPALEMEIKNVVKSDESELFLTPKRENDFESEVKGEKTGILLKPKPEMFAKSAAQIVNEQRSNLAPTARMAMTRRVHPLLSLNPYQGNWTIKVRVTNKEAMRYYKNARGEGCVFNIELTDDDETQIQATMFNEAARKFYDKFELGKVYYISKGTLKVANKKFSTVKNDYEMTLNENSEVEEAINEATFVPVTKFNFVPIDMLGPYVNGKELVDVIGVVQNVSPAISIRRKINNETAPKREITIADETKKTVAVSLWNVLATNVGQELLDMVDQSPVIAIKSLKVGDFQGVSLSSVSKSKLLVNPDIPEAKKLKLWFDSEGKGISMASVGSSLGASSKNGGRSMYSDRTSLSYIIQNPSLGDDKPMFFSIKAYISSIKPDQTMWYRACKTCNKKVTEAIGSGFWCEGCQKSDGECSLRYIMVVRISDASGEVYLSLFNDEAETIIGCTADELDKMKSQIDEENSYEMKLKEATWVPYLFRVSVSQNEYNNEKRQRITARAVAPVDFASESRLLLEEISSSRISK 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14079346 14082568 - Bpe021601.1 Bpe07g00755 106524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00755 625 Gene3D - 291 430 IPR012340 -
Bpe07g00755 625 PANTHER REPLICATION FACTOR A 1, RFA1 5 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bpe07g00755 625 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Bpe07g00755 625 SUPERFAMILY Nucleic acid-binding proteins 296 424 IPR012340 -
Bpe07g00755 625 CDD RPA1_DBD_A 180 283 - -
Bpe07g00755 625 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bpe07g00755 625 CDD RPA1_DBD_C 463 620 IPR013955 -
Bpe07g00755 625 Gene3D - 6 115 IPR012340 -
Bpe07g00755 625 SUPERFAMILY Nucleic acid-binding proteins 178 288 IPR012340 -
Bpe07g00755 625 CDD RPA1_DBD_B 313 419 - -
Bpe07g00755 625 Gene3D - 177 286 IPR012340 -
Bpe07g00755 625 Pfam Replication protein A OB domain 309 405 IPR031657 -
Bpe07g00755 625 SUPERFAMILY Nucleic acid-binding proteins 447 620 IPR012340 -
Bpe07g00755 625 Pfam Replication factor-A C terminal domain 468 614 IPR013955 -
Bpe07g00755 625 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 619 - -
Bpe07g00755 625 MobiDBLite consensus disorder prediction 1 21 - -
Bpe07g00755 625 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bpe07g00755 625 Gene3D - 431 620 IPR012340 -
Bpe07g00755 625 SUPERFAMILY Nucleic acid-binding proteins 3 108 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00755 K07466 RFA1, RPA1, rpa; replication factor A1 - mnt:21390529 929.858
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00755 Bpe12g00524 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00755 Bpe-Chr7:14079346 Bpe13g01237 Bpe-Chr13:17632853 5.09E-97 dispersed
Bpe12g00524 Bpe-Chr12:11107744 Bpe07g00755 Bpe-Chr7:14079346 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g667 . . Bda06g00521 . Bpe12g00524 . . Bma12g00964 . . . . . Car11g00189 Sed08g0277 . Cpe04g01458 Bhi02g00093 Tan09g2042 Cmetu02g0517 . Hepe09g0275 . . Cla06g01537 Cam06g1696 Cec06g1758 Cco06g1757 Clacu06g1663 Cmu06g1609 Cre06g2422 . . . . . . . . . Blo15g00339 . . Bpe07g00755 . . Bma08g00242 . . Cmo11g00212 . . . . . . . . . . . . . . . . . . . . Lsi06g01410 Csa01g00297 Chy02g02440 Cme02g01827
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00926 . 145 829 Core DNA Replication Machinery Family AT4G14700 62.7 1.0e-249 859.8
Bpe11g00926 . 146 829 Core DNA Replication Machinery Family AT4G12620 63.5 1.5e-256 882.5
Bpe05g00056 . 7 358 Core DNA Replication Machinery Family AT2G37560 66.2 1.0e-137 486.5
Bpe02g02014 . 1 413 Core DNA Replication Machinery Family AT2G01120 61.4 2.5e-138 488.8
Bpe05g00990 . 4 534 Core DNA Replication Machinery Family AT4G29910 56.5 8.8e-171 597.0
Bpe02g02348 . 1 324 Core DNA Replication Machinery Family AT1G26840 59.6 1.3e-93 339.7
Bpe07g00465 . 1 800 Core DNA Replication Machinery Family AT1G79150 54.6 2.3e-228 788.9
Bpe08g01190 . 1 948 Core DNA Replication Machinery Family AT1G44900 75.4 0.0e+00 1364.4
Bpe01g00814 . 1 550 Core DNA Replication Machinery Family AT5G46280 81.0 1.8e-256 881.7
Bpe15g00852 CCT,ECH 1 826 Core DNA Replication Machinery Family AT2G16440 70.2 0.0e+00 1116.3
Bpe02g02150 . 936 1646 Core DNA Replication Machinery Family AT2G07690 77.2 0.0e+00 1075.8
Bpe08g00796 . 18 846 Core DNA Replication Machinery Family AT5G44635 69.9 0.0e+00 1113.6
Bpe10g00498 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1189.5
Bpe01g00096 . 40 517 Core DNA Replication Machinery Family AT2G29680 56.7 2.5e-148 522.3
Bpe01g00096 . 1 479 Core DNA Replication Machinery Family AT1G07270 54.8 2.6e-136 482.3
Bpe10g00347 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.6 9.3e-256 879.4
Bpe04g01592 . 28 854 Core DNA Replication Machinery Family AT3G09660 68.0 4.8e-308 1053.5
Bpe15g00015 . 5 626 Core DNA Replication Machinery Family AT2G14050 66.5 4.0e-236 814.3
Bpe05g00287 . 29 421 Core DNA Replication Machinery Family AT2G20980 53.5 1.8e-109 392.9
Bpe09g00382 . 1 142 Core DNA Replication Machinery Family AT1G80190 69.0 6.3e-55 210.7
Bpe05g00429 . 1 143 Core DNA Replication Machinery Family AT3G12530 71.3 7.7e-58 219.9
Bpe08g00963 . 1 145 Core DNA Replication Machinery Family AT3G12530 65.5 6.8e-54 206.8
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT1G19080 65.9 4.6e-68 254.2
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT3G55490 65.9 4.6e-68 254.2
Bpe14g01095 . 16 165 Core DNA Replication Machinery Family AT5G49010 66.7 1.3e-52 203.0
Bpe15g00335 . 1 1555 Core DNA Replication Machinery Family AT5G67100 57.9 0.0e+00 1691.0
Bpe10g00777 . 2 617 Core DNA Replication Machinery Family AT1G67630 60.9 3.9e-220 761.1
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe05g00690 . 1 457 Core DNA Replication Machinery Family AT5G41880 63.8 4.2e-176 614.4
Bpe06g00299 . 27 1143 Core DNA Replication Machinery Family AT5G63960 78.3 0.0e+00 1749.9
Bpe03g01146 . 4 442 Core DNA Replication Machinery Family AT2G42120 77.2 4.7e-204 707.2
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe12g00614 . 6 120 Core DNA Replication Machinery Family AT1G09815 60.2 6.3e-37 150.2
Bpe01g00239 . 4 2121 Core DNA Replication Machinery Family AT1G08260 68.6 0.0e+00 2874.0
Bpe01g00239 . 11 2228 Core DNA Replication Machinery Family AT2G27120 65.7 0.0e+00 2848.5
Bpe07g01082 . 7 460 Core DNA Replication Machinery Family AT5G22110 63.7 2.6e-171 598.6
Bpe08g00232 . 7 905 Core DNA Replication Machinery Family AT5G22010 62.6 3.1e-282 968.0
Bpe05g00631 . 4 334 Core DNA Replication Machinery Family AT1G63160 89.4 1.8e-171 598.6
Bpe02g00056 CCT 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 1.6e-178 622.1
Bpe04g00011 . 4 337 Core DNA Replication Machinery Family AT1G21690 80.6 1.6e-151 532.3
Bpe14g00388 CCT 1 363 Core DNA Replication Machinery Family AT1G77470 78.2 5.0e-159 557.4
Bpe13g01237 . 26 617 Core DNA Replication Machinery Family AT2G06510 68.8 2.3e-249 858.2
Bpe07g00251 . 34 688 Core DNA Replication Machinery Family AT2G06510 53.2 3.6e-202 701.4
Bpe12g00524 CCT 1 626 Core DNA Replication Machinery Family AT5G08020 66.0 2.1e-239 825.1
Bpe07g00755 CCT 1 625 Core DNA Replication Machinery Family AT5G08020 65.7 4.4e-237 817.4
Bpe12g00524 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 65.2 6.6e-236 813.5
Bpe07g00755 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 64.4 8.1e-234 806.6
Bpe07g00251 . 8 809 Core DNA Replication Machinery Family AT4G19130 52.9 1.2e-229 793.1
Bpe02g01809 . 1 396 Core DNA Replication Machinery Family AT5G26680 79.7 5.1e-184 640.6
Bpe04g01926 . 1 299 Core DNA Replication Machinery Family AT2G25100 67.6 9.8e-115 409.8
Bpe08g00178 . 46 802 Core DNA Replication Machinery Family AT1G08130 68.0 1.0e-289 992.6
Bpe08g00178 . 209 802 Core DNA Replication Machinery Family AT1G49250 66.8 7.9e-232 800.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007473 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00755 Bpe_Chr07 FPKM 14.285392 18.209684 15.703111 13.729826 15.797611 16.050606 16.308886 31.986389 34.228096 35.431477