Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00762 ATGGGTAGTGAAAACCTAAAGACATGGGTATCCGACAAGCTCATTTCAATGCTTGGATATTCTCAACCAACAATCGTCCAATACATTATTGGATTAACCAAACAAGCAACATCACCTGCTGATGTTGCAGAAAAGCTGGAAGAAGTTGGATTATCATCCACCAGCGAAACACAAGCTTTTGCTGAGGAAATATTTTCAAGAGTGCCACATAAATCATCTGGTTTAAATCATTATCAAAAGCAAGAGAGGGAAGCTGCTATGTTGGTGAGAAAGCAGAAATCTTATGCAATATTGGATGCTGATGACGATGAAGATGAAGTAAATGCTACAGGAGGAAGCAGTAGTAAAAGTTCTCTCTCTGTAGCTTCTGACAGTTCAAAAGTAGATAGACACATGAAACGATTCAGAAAGAAAGCTGAAAGTCAAGATGACGATGATGAGGCACTGTGCTTTTTTGAAATTTTGCTCACGGATTCCATACACACACCCACAACCACTTCTACAATCTCACAGTCACTCACATATAGATCATGTTTAATTGGTTTGCAGTCAGAAGAAGAAAGACTACGGGATCAAAGGGAGAGGGAGCAGTTTGAGCGCAATATTAGAGAACGTGATGCGGTTGGGACACGGAAGTTGACAGAGTCAAAATTAACTCGAAAGGAGGAAGAAGAGGCAATCCGGAGATCAAATGCGTTCGAGCAAAATGAACTCGAAACTTTAAGGAAAGTTTCAAGACAAGAGTATTTAAAAAAAAGGGAGCAAAAGAAACTCGATGAAATTAGGGAAAACTTTCCTTTTTTTCCTTTTCCTAACTTATATGTTATGATTAACCACAGAGATGACATTGAAGATGAGCAATATTTGTTTGAAGGTGTAAAGCTCACTGATGCAGAATACCGTGAGTTAAGGTACAAAAAGGAAATTTATGAGCTTGTGAAGAAACGATCGGAGGAAGTTGACAACAGCACTGAGTACAGGATGCCAGATGCATATGACCTAGATGGTAGAATTAATCAGGAGAAGAGATTTTCTGTAGCTATGCAGCGTTATAGGGATCCAAGTGCTGTGGAGAAAATGAATCCATTTGCAGAACAAGAGGCTTGGGAGGAACATCAAATTTCGAAAGCAAACTTGAAATTTACTTCCAAAAGTAAAAAGCCACTCTCTGATGACTATCAGTTTGTTTTTGAAGACCAGATTGAGTTCATCAAGGCATCAGTAATGGAAGGTGATGAGTTTTCTGAACAACCAACCGAGTTACTTGAAAAGTTAGAGGCAAAATCAGCTCTGGAGAAACTTCAGGAAGATAGGAAAACATTACCAATATACCCATATCGTGAAGAATTGCTCCAAGCTGTTAATGATCATCAGGTTCTTGTTATTGTGGGTGAAACTGGTTCAGGGAAGACTACGCAAATACCCCAATATCTTCATGAAGCTGGGTATACCAAACGTGGACAGATTGGATGTACCCAACCACGTCGAGTTGCTGCTATGAGTGTCTCTGCCAGAGTTTCTCAAGAAATGGGTGTCAAACTCGGGCATGAGGTTGGTTATTCCATTCGTTTTGAGGATTGCACATCAGAGAAAACTGTCTTAAAATATATGACAGATGGGATGTTGTTACGAGAATTCTTGGGCGAGCCTGATCTTGCAAGCTACAGTGTGGTTATGGTGGATGAGGCCCATGAAAGAACCCTGTCAACTGACATTCTATTTGGTCTAGTTAAGGATATATCACGATTTCGGCCTGATCTTAAATTGTTGATTTCAAGTGCAACACTTGACGCTGAGAAATTTAGTGACTACTTTGACTCTGCTCCAATATTCAAAATTCCTGGAAGGCGGTATCCAGTGGAAATAAACTTTACGAAAGCGCCTGAAGCAGATTACTTAGATGCAGCAATAGTGACTGCTCTTCAGATTCATGTGACACAATCTCCCGGAGATATATTAGTGTTCCTCACTGGTCAAGAAGAAATTGAAACAGCAGAAGAAATTTTGAAGCACAGAACAAGGGGTCTTGGTACAAAGATAGCAGAGCTAATCATCTGCCCAATATATGCCAACCTACCAACAGAGCTGCAAGCTAAGATTTTTGAGCCTACTCCAGAAGGGGCAAGGAAGGTTGTTTTGGCAACTAATATAGCAGAGACATCTTTGACGATTGATGGGATCAAATATGTTATTGACCCTGGTTTTTGCAAGATGAAAACCTATAATCCTAGGACGGGGATGGAATCTCTACTAATTGCTCCCATTTCTAAAGCATCAGCAAATCAGAGGGCAGGCCGATCAGGACGAACAGGGCCTGGAAAGTGCTTCCGTCTGTATACTGCCAACAATTACTACACTGATCTGGATGACAATACCGTGCCAGAAATACAGCGGACAAACCTCGCAAATGTTGTATTAACTCTCAAGAGTCTTGGAATTCATGACCTATTAAATTTTGATTTTATGGATCCACCACCATCTGAAGCATTAATAAAATCCCTAGAACTACTTTTTGCACTCAGTGCTTTAAATAGTCTTGGTGAATTGACTAAAATGGGCAGGCGGATGGCTGAGTTTCCTCTTGATCCCATGCTGTCAAAAATGATTGTTGCTTCTGACAAGTATAAGTGTTCAGATGAGATCATTTCCATTGCTGCTATGCTTTCTATTGGAAATTCGATATTTTATCGTCCAAAGGATAAACAAGTTCATGCTGATAATGCAAGAATGAATTTTCATGCTGGAAATGTTGGAGACCATATTGCCCTACTTAAGGTCTATAACTCTTGGAAAGAAACGAACTTCTCAACTCAGTGGTGTTATGAGAATTACATTCAGGTTAGGAGTATCAAGCGTGCTCGGGACATTAGAGATCAACTTGAGGGGCTCTTAGATAGGGTTGAGATTGAGCTCACGTCAAATTCCGGTGATCTAGAGGCTATAAAGAAGGCCATAACATCGGGATTCTTCCCTCATTGTGGGCGGCTACAGAAGAATGGATCTTACCGCACGGTTAAATTCCCACAAACTGTTCATATACATCCAAGCTCAGGGCTGGCACAGGTGCTTCCAAGATGGGTCGTGTACCATGAATTGGTTCTCACATCGAAAGAATATATGAGACAGGTAACCGAACTGAAGCCTGAATGGTTGATTGAAATAGCTCCTCATTACTACCAAATGAAGGACGTGGAAGACTCGGCTTCTAAGAAAATGCCTCGTGGAGAAGGTCGTGCTTCGAATGACTTGCAGCACATTAATGGGTGA 3267 40.83 MGSENLKTWVSDKLISMLGYSQPTIVQYIIGLTKQATSPADVAEKLEEVGLSSTSETQAFAEEIFSRVPHKSSGLNHYQKQEREAAMLVRKQKSYAILDADDDEDEVNATGGSSSKSSLSVASDSSKVDRHMKRFRKKAESQDDDDEALCFFEILLTDSIHTPTTTSTISQSLTYRSCLIGLQSEEERLRDQREREQFERNIRERDAVGTRKLTESKLTRKEEEEAIRRSNAFEQNELETLRKVSRQEYLKKREQKKLDEIRENFPFFPFPNLYVMINHRDDIEDEQYLFEGVKLTDAEYRELRYKKEIYELVKKRSEEVDNSTEYRMPDAYDLDGRINQEKRFSVAMQRYRDPSAVEKMNPFAEQEAWEEHQISKANLKFTSKSKKPLSDDYQFVFEDQIEFIKASVMEGDEFSEQPTELLEKLEAKSALEKLQEDRKTLPIYPYREELLQAVNDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGQIGCTQPRRVAAMSVSARVSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTALQIHVTQSPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKTYNPRTGMESLLIAPISKASANQRAGRSGRTGPGKCFRLYTANNYYTDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLNFDFMDPPPSEALIKSLELLFALSALNSLGELTKMGRRMAEFPLDPMLSKMIVASDKYKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHAGNVGDHIALLKVYNSWKETNFSTQWCYENYIQVRSIKRARDIRDQLEGLLDRVEIELTSNSGDLEAIKKAITSGFFPHCGRLQKNGSYRTVKFPQTVHIHPSSGLAQVLPRWVVYHELVLTSKEYMRQVTELKPEWLIEIAPHYYQMKDVEDSASKKMPRGEGRASNDLQHING 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14135625 14154014 - Bpe021608.1 Bpe07g00762 106531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00762 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 963 IPR027417 -
Bpe07g00762 1088 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 451 614 IPR014001 -
Bpe07g00762 1088 SMART helicmild6 663 771 IPR001650 -
Bpe07g00762 1088 Coils Coil 950 970 - -
Bpe07g00762 1088 MobiDBLite consensus disorder prediction 110 125 - -
Bpe07g00762 1088 Pfam Helicase associated domain (HA2) 833 907 IPR007502 GO:0004386
Bpe07g00762 1088 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 981 1058 IPR011709 -
Bpe07g00762 1088 Gene3D - 816 975 - -
Bpe07g00762 1088 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 556 565 IPR002464 -
Bpe07g00762 1088 CDD SF2_C_RHA 618 779 - -
Bpe07g00762 1088 Coils Coil 244 264 - -
Bpe07g00762 1088 SMART ha2_5 832 924 IPR007502 GO:0004386
Bpe07g00762 1088 PANTHER OS05G0389800 PROTEIN 107 1080 - -
Bpe07g00762 1088 Pfam Helicase conserved C-terminal domain 643 771 IPR001650 -
Bpe07g00762 1088 Gene3D - 395 616 IPR027417 -
Bpe07g00762 1088 PANTHER ATP-DEPENDENT RNA HELICASE 107 1080 - -
Bpe07g00762 1088 Gene3D - 617 792 IPR027417 -
Bpe07g00762 1088 MobiDBLite consensus disorder prediction 100 125 - -
Bpe07g00762 1088 MobiDBLite consensus disorder prediction 1066 1088 - -
Bpe07g00762 1088 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 637 812 IPR001650 -
Bpe07g00762 1088 SMART ultradead3 439 623 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00762 K12813 DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13] - jre:108990957 1741.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00762 Bpe-Chr7:14135625 Bpe09g00613 Bpe-Chr9:14843964 0 dispersed
Bpe07g00762 Bpe-Chr7:14135625 Bpe06g00591 Bpe-Chr6:16772216 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g625 . . Bda06g00528 . . . . Bma12g00972 . . . . . Car11g00178 . . Cpe04g01469 Bhi02g00257 . . . . . . . . . . . . . . . . . . . . . . Blo15g00330 . . Bpe07g00762 . . . . . Cmo11g00202 . . . . Cpe09g01050 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005975 1 6 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00762 Bpe_Chr07 FPKM 13.269406 12.972097 10.373047 7.14727 9.64532 16.247644 7.213572 5.800922 5.369174 3.31422