Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00764 ATGCTCGGAAAATCGAAAGTTATTGTGAACATTGGGCTTTTCCCAATCGTTGGCGAATTTGATCTACGCAATCGTAGAATCGCCTATCGATCGTTCTTCCGGTTCAAACCTCGTCGGTCTCTTCAAATCCACCCTTTCATGTTTCATCACCAACCTTCCTCGTCCTATTTTTATCATGTTTCTCCCTCCTTCACTGCGAATCCAGCTCCATTCACGTCGTGTTCCCAGCCTGCTGTGCCGTCAGTCGTTAGCTTACTGCCTGCGGTTAACCAGCCTGGTACCGACCCATATGCTGCCAATTTGGGGTCCTACCCGTCGACCCATGTAGGATATGAAGGTCAAACGCAAGTTTTTCAGGACCCAAATGCACGCTCTTATACTGGGATCGTTGAACAAGCTGACCCCAGAAATTATGAATATGCAATACCTTCTCAAGAGTATCAAGTAACACCTACAAGTTTAACTTCTTCGTGGAATAGCAATCAGAATGGTCAATCTATTGTAAATCATACTCCAATGATTCCGTATGAAACAAATTTTAATCAATTGATACGGTGTGAGGTTTGCAAAATTGATTGCAACAGGAGAGATGTTTATCAAAAACACATACAGGGAAAGAAGCACAAAAATAAATTGAAATTGCGTGATTATTCATTGAATACAGTGTTACCAAAAACTGTTCATGCCTTCAATGACATCAATATTTCTACTGGAATCAAAACTGTCAATGGACAAATGGCACCTGTGCTTTCATTTGTTACCGCAGGTGAGGATTTGGAGAAGAAAAAACAAAAGGTTTTAACTGGTGGTGCAGCAGTCGAATCTGTGAGAGTTTGCAGAATATGTGACGTTGTGTGTAATAGTCAAGATGTATTCATGAAACATCTGGCTGGAAAAAAGCATTCTGCTCTGGCTCACTTGATAGCTCAAAATCCCTTCGTAGCTGCAGTTCGGTCGCACTATGATAGCACCCAGAAGAAAATACCAAAACCGACAAAAATCATTCAGTCCGCATGGTGTGAAGTGTGTAAAATCAACTGCAACAGCAATGATGTCTATGTCAAACATCTATCAGGAAAAAAACATTTGAAGAATGTCGAAAAATCAAGCAACCCCTCCGAGCCAAATCGAGTGATTGGGCCCGTGGAGAATCCGGCTGCAAATAAACCCACAAATAGAGATATGGAAAACTCATGCAAACCATCAGCTCAATCTGGTATGCCGGAAGATCTCGAGTCGAAGAAGAGGAAAGTTTTGGAGAGTGGAGCAGCTGCTGGAGCTGTTAAGGTATGCACCATGTGTAATGTGATTTGTAATAGTCAGACGGTTTTCAATTTTCATTTATCTGGCCAGAAACATGCCAATATGATGAAGAAACAGCAAGAAGGTAGTTCTTAG 1398 41.7 MLGKSKVIVNIGLFPIVGEFDLRNRRIAYRSFFRFKPRRSLQIHPFMFHHQPSSSYFYHVSPSFTANPAPFTSCSQPAVPSVVSLLPAVNQPGTDPYAANLGSYPSTHVGYEGQTQVFQDPNARSYTGIVEQADPRNYEYAIPSQEYQVTPTSLTSSWNSNQNGQSIVNHTPMIPYETNFNQLIRCEVCKIDCNRRDVYQKHIQGKKHKNKLKLRDYSLNTVLPKTVHAFNDINISTGIKTVNGQMAPVLSFVTAGEDLEKKKQKVLTGGAAVESVRVCRICDVVCNSQDVFMKHLAGKKHSALAHLIAQNPFVAAVRSHYDSTQKKIPKPTKIIQSAWCEVCKINCNSNDVYVKHLSGKKHLKNVEKSSNPSEPNRVIGPVENPAANKPTNRDMENSCKPSAQSGMPEDLESKKRKVLESGAAAGAVKVCTMCNVICNSQTVFNFHLSGQKHANMMKKQQEGSS 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14162765 14165353 + Bpe021610.1 Bpe07g00764 106533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00764 465 PANTHER ZINC FINGER RNA-BINDING PROTEIN 47 313 - -
Bpe07g00764 465 SMART c2h2final6 184 208 IPR013087 -
Bpe07g00764 465 SMART c2h2final6 277 301 IPR013087 -
Bpe07g00764 465 SMART c2h2final6 429 453 IPR013087 -
Bpe07g00764 465 SMART c2h2final6 338 362 IPR013087 -
Bpe07g00764 465 Gene3D Classic Zinc Finger 256 306 - -
Bpe07g00764 465 Gene3D Classic Zinc Finger 174 216 - -
Bpe07g00764 465 Gene3D Classic Zinc Finger 317 370 - -
Bpe07g00764 465 Gene3D Classic Zinc Finger 410 462 - -
Bpe07g00764 465 MobiDBLite consensus disorder prediction 390 404 - -
Bpe07g00764 465 SUPERFAMILY beta-beta-alpha zinc fingers 428 460 IPR036236 -
Bpe07g00764 465 PANTHER - 47 313 - -
Bpe07g00764 465 SUPERFAMILY beta-beta-alpha zinc fingers 321 368 IPR036236 -
Bpe07g00764 465 SUPERFAMILY beta-beta-alpha zinc fingers 273 303 IPR036236 -
Bpe07g00764 465 SMART ZnF_U1_5 274 308 IPR003604 GO:0003676|GO:0008270
Bpe07g00764 465 SMART ZnF_U1_5 335 369 IPR003604 GO:0003676|GO:0008270
Bpe07g00764 465 SMART ZnF_U1_5 426 460 IPR003604 GO:0003676|GO:0008270
Bpe07g00764 465 SMART ZnF_U1_5 181 215 IPR003604 GO:0003676|GO:0008270
Bpe07g00764 465 PANTHER ZINC FINGER RNA-BINDING PROTEIN 317 460 - -
Bpe07g00764 465 PANTHER - 317 460 - -
Bpe07g00764 465 MobiDBLite consensus disorder prediction 364 415 - -
Bpe07g00764 465 SUPERFAMILY beta-beta-alpha zinc fingers 170 214 IPR036236 -
Bpe07g00764 465 Pfam Zinc-finger of C2H2 type 185 208 - -
Bpe07g00764 465 Pfam Zinc-finger of C2H2 type 279 301 - -
Bpe07g00764 465 Pfam Zinc-finger of C2H2 type 339 362 - -
Bpe07g00764 465 Pfam Zinc-finger of C2H2 type 430 453 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00764 - - - qsu:112029653 365.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00764 Bpe-Chr7:14162765 Bpe13g00772 Bpe-Chr13:14202689 3.97E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g614 . . Bda06g00530 . . . . Bma12g00974 . . Cma10g00222 . Car10g00206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe07g00764 . . . . . . . . . . . Cpe18g00771 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011197 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00764 Bpe_Chr07 FPKM 12.127142 12.523534 11.544876 10.71835 16.415529 16.489511 17.630608 27.741493 25.918667 28.129221