Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00767 ATGGAAATCACAGAGGAGCAACGGAAGCGAGCCGAGACGAACCGGTTAGCGGCCTTGGCGAAACGTAAAGTACTGATTGAATCTTGTTCCAGCAATTTTCCAAAGAAAGATACTTGGAGTCTGTTTAAGTGTCGGAAGATTTCTTCCCGATTCTGTGCTACAAGTGGAGCCCAACAGAAGCAGCAGGAAAAAATTTTGGTCGATCCGGTTTCTACCACCCATTTGGATGAAAGGTTTAGGGTCAGGCTCGAAATTTGCTCCCCAGATTCATTCTCTGCGACACCCAAATTAGTTCGGGGGTTTCAGTATCCGGGAGAAGAAGAATGCTTTAGGAGACTAAACGAGTGTTTGTCAGATGTTATGCCATCGCACTTTACACAAAACAATGGCGGTGGAAAGGCATGCGTGTATAAGTTAAAGGATTACAATGCAGTTTTGAAATGTTTAAAAATCTCCAAAACTATTGAAACTGAAGAGATTCCTTGGGCAACTTTTAATGTGGTTGAGAAACTCTCACATTCATTTTTTCTGGGGAGGTGGATTCCGTGCAGGCCAGAGCATTTTTCAGATGACAAGGTTGATCAATTTATAGACAATTTGCCAAAGAAGTTGGTACACATGCTCTTGCCTTTCCAGCTTGAGGGCGTCAAATTTGGTTTGCGAAGAGGTGGCAGGTGTCTGATTGCTGATGAAATGGGCCTTGGAAAAACAGTTCAGGCTATTGCCATTGCTGGTTGTTTCATGAATGAAGGTTCCATACTCGTCGTTTGCCCGGCAATTTTACGTTTTTCATGGGCTGAAGAACTGGAACGGTGGCTTCCATTTTGCTCACCCTCAGACATTCATCTTGTTTTTGGTCATCGAGACAATCCTTCTAATTTACCAAAATTGCCAAAAGTTGTCGTTATTTCTTATACAATGCTTTATCGGTTGCGTAAGAGCATGCTTGAGCAAGAATGGGCTCTCTTGATTGTTGATGAATCTCACCATGTAAGATGTACAAAGAAGGCATCAGAACCAGAAGAGATAAATGCCGTTCTTGATCTGGCTACTAAGGTCAAGCATATAGTTCTCCTATCAGGGACTCCGTCTTTGACAAGGTTGCCTGGTTTGCTGGGAAAGACCAAGTATTGTTTTGCAAAAACTTACTGTGCAGTTGAATATGTTACCACTGCTCAGGGAAAAACGTTTCAGGATTTCTCAAAGGGAATTCGCTTGGAAGAGTTGAATGTTTTACTCAAGCAAACAGTCATGATTAGACGTTTGAAAGAACATGTGCTTGTTCAGCTACCTCCCAAACGCAGGCAAATTATAAGATTGTTGTTAAAGAAATCAGACATAATTGCTGCAAAGGCTGCTGTTAGGGAGTTACATAATGGCCACACTGAGAGAAGTGCTGGGGAGACTTTAGACAAATCTTATGGTAAGATAGGTATTGCAAAACTGTCTGGGTTTCGAGAATGGTTTTGCATTCACCCTTTAATTACTGAAACTGATGGAGTAGTGGACTTGGATTCCATGAGTAGTTCTCAAAAAATGATCATTTTTGCCCATCATCATAAAGTGCTTGATGGAGTACAAGAACTCATCTGCGAAAAGGGGATTGGCTTTGTCCGCATTGATGGAAACACCCTCGCTAGGGAAAGGCAATCAGCAGTTAAATCATTCCAGTCATCAGCTGAGGTCAAAATTGCGATAATAGGTGTAACCGCTGGTGGTGTTGGACTTGATTTCTCATCTGCACAAAATGTTGTGTTCTTGGAGCTTCCTCAGTCCCCATCATTGATGCTTCAGGCTGAGGATAGAGCTCACAGACGAGGACAAACAAATGCAGTCAACGTGTACATCTTCTGTGCAAAGGATACTTTGGATGAGTCACTTTGGCGAAGTTTAACCAAGAGTTTACGGCGTGTTTCTTCTGCAACAAATGGGAAATATGATGCAATTCAAGAGATAGAGGTTGACACTGTCTCTTATCTAAAAACTTCTGATAAAACTGAGACAAGTCTTGGAAATCAGCTTTTGGACGTAGCAGCATGTGATGAGCCCTCATCTGTGAATACAGAGCCACAAGATAAGGACTTTGTCAAGGATGTATACTCTACTGAAATGCACGATGAAGTGGCTGAAAATATCAATGATCAGTCTATTAAACTTCACAAAAATCTTAGTTGTTCAACTAAAACAGACATGCATCATGAGGTCCTTTTCAAACTCATGTTTCCAATTTTTTTGTTACAAAAAGAAAAAAACATTAGCAAAATGAAAGAAAATTCTGAAGCTGAAACTGAGAATCTTAACAGAGTTTTCTCCCCTCGATCAGATCGACTCAACGGAGGCACCAATCAAACACAGAAAGAACAAAATTTCTATGATCAAACAGAAAAGATACATGGACCAGCTATAACCAGTGACACTAATAGAAGTTACACTAAGGATGTAGATTCTTTACGATTTGAGGTTAGCCAATATACTGGAAGGATTCACTTGTATACCTGCATATCTGGAACCGATATGAGACCGAGACCACTCTTTGTCAGTTTTCGACCCGAGGAACTTGAAATACTGACTTCAGATGATAGTGAGTGGACAGAGGCCAATTCCTTGACAGAGACATCAATATCGAAAAAAGCTCTTTTTGAATTTATTGAAGAGTGGAACAGATTAAGACCCATTGAACGAAAAAAGTTGCTTGGAAAGCCTTTGCAACTTCCTTTATATGTCGAGTTATGCTGCTTGAGGGAAAACATCCATCACAATACTAATGGAATATTGAAGATTAAAAGTACGCGACGGAGTACACCATTTAACGAGATTAGCCAACCGTTACCGTCAAATGCTGTTTGGAAAACAATCCAAATATGTATTGGCTCTGGGAAAAAGAAGAAAGAATACATTCAGGGTTGGACCTTGACAGATGAACCACTATGCAAACTTTGTCAAACGCCATGCATAGGTAACAATGTCAAGATGCCACAGTTTTTTGAGGATCTTTTCTGTAACCTTGGATGCTACGAAGAATATCGAATTAGGATCAGTAGCAGATCCCTCCGACAGGAGCTTTTTCAAATAGAACACGGTATCTGCTCAAATTGTCATTTGGACTGTCATAAACTTGTGCGGCATATAAAACCTTTATCATTGGCCATGAGGCGAGAATATGTGGAGAAAGTTGCACCAAATGTAGCAAGAAGGAAGAAATTACTCGATAAGCTTGTTAATAATCCAAGCGAGGGAAATGCATGGCATGCAGACCACATTGTTCCTGTCTACCAAGGAGGAGGAGAGTGTCGGTTAGAGAACATGAGGACTCTATGTGTGGCCTGCCATTCTGATGTTACAGCAGCACAATGCGCTGAACGACGCTCGACAAGGCTGAAGGCAAAGAAGCAACTCAAA 3399 41.13 MEITEEQRKRAETNRLAALAKRKVLIESCSSNFPKKDTWSLFKCRKISSRFCATSGAQQKQQEKILVDPVSTTHLDERFRVRLEICSPDSFSATPKLVRGFQYPGEEECFRRLNECLSDVMPSHFTQNNGGGKACVYKLKDYNAVLKCLKISKTIETEEIPWATFNVVEKLSHSFFLGRWIPCRPEHFSDDKVDQFIDNLPKKLVHMLLPFQLEGVKFGLRRGGRCLIADEMGLGKTVQAIAIAGCFMNEGSILVVCPAILRFSWAEELERWLPFCSPSDIHLVFGHRDNPSNLPKLPKVVVISYTMLYRLRKSMLEQEWALLIVDESHHVRCTKKASEPEEINAVLDLATKVKHIVLLSGTPSLTRLPGLLGKTKYCFAKTYCAVEYVTTAQGKTFQDFSKGIRLEELNVLLKQTVMIRRLKEHVLVQLPPKRRQIIRLLLKKSDIIAAKAAVRELHNGHTERSAGETLDKSYGKIGIAKLSGFREWFCIHPLITETDGVVDLDSMSSSQKMIIFAHHHKVLDGVQELICEKGIGFVRIDGNTLARERQSAVKSFQSSAEVKIAIIGVTAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESLWRSLTKSLRRVSSATNGKYDAIQEIEVDTVSYLKTSDKTETSLGNQLLDVAACDEPSSVNTEPQDKDFVKDVYSTEMHDEVAENINDQSIKLHKNLSCSTKTDMHHEVLFKLMFPIFLLQKEKNISKMKENSEAETENLNRVFSPRSDRLNGGTNQTQKEQNFYDQTEKIHGPAITSDTNRSYTKDVDSLRFEVSQYTGRIHLYTCISGTDMRPRPLFVSFRPEELEILTSDDSEWTEANSLTETSISKKALFEFIEEWNRLRPIERKKLLGKPLQLPLYVELCCLRENIHHNTNGILKIKSTRRSTPFNEISQPLPSNAVWKTIQICIGSGKKKKEYIQGWTLTDEPLCKLCQTPCIGNNVKMPQFFEDLFCNLGCYEEYRIRISSRSLRQELFQIEHGICSNCHLDCHKLVRHIKPLSLAMRREYVEKVAPNVARRKKLLDKLVNNPSEGNAWHADHIVPVYQGGGECRLENMRTLCVACHSDVTAAQCAERRSTRLKAKKQLK 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14182940 14194795 - Bpe026081 Bpe07g00767 106536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00767 1133 Coils Coil 745 765 - -
Bpe07g00767 1133 Pfam SNF2-related domain 226 446 IPR000330 GO:0005524|GO:0140658
Bpe07g00767 1133 Coils Coil 1 21 - -
Bpe07g00767 1133 Pfam HNH endonuclease 1080 1114 IPR002711 GO:0003676|GO:0004519
Bpe07g00767 1133 SMART helicmild6 524 607 IPR001650 -
Bpe07g00767 1133 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 660 IPR001650 -
Bpe07g00767 1133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 660 IPR027417 -
Bpe07g00767 1133 Gene3D - 206 439 IPR038718 -
Bpe07g00767 1133 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1133 - -
Bpe07g00767 1133 Pfam Helicase conserved C-terminal domain 507 607 IPR001650 -
Bpe07g00767 1133 Gene3D - 1005 1133 - -
Bpe07g00767 1133 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 217 381 IPR014001 -
Bpe07g00767 1133 SMART ultradead3 204 389 IPR014001 -
Bpe07g00767 1133 CDD SF2_C_SNF 508 618 - -
Bpe07g00767 1133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 385 IPR027417 -
Bpe07g00767 1133 CDD HNHc 1074 1114 IPR003615 -
Bpe07g00767 1133 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1133 - -
Bpe07g00767 1133 Gene3D - 501 684 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00767 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-] - jre:108979869 1464.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00767 Bpe-Chr7:14182940 Bpe13g00716 Bpe-Chr13:13709208 4.33E-74 dispersed
Bpe07g00767 Bpe-Chr7:14182940 Bpe01g00326 Bpe-Chr1:2018241 9.55E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g621 . . . . . . Bma06g00128 Bma12g00977 . . Cma10g00160 . Car10g00202 . . . . Bhi02g00275 . . . . . . . . . . . . . . . . . . . . . . Blo15g00326 . . Bpe07g00767 . . . . . . . . . . . Cpe18g00774 . . . . . . . . . . . . . . . . Chy02g02461 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010723 0 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21656 PF00176 SNF2_N 1.60E-23 CL0023 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00767 Bpe_Chr07 FPKM 21.792732 23.834213 6.59765 6.667473 8.577765 8.238049 8.306851 3.273218 3.008522 3.154773