Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00768 ATGGGAATCAAAAAACAGACGAGAAAACCAGAGAGTTTAAACTCCAACCTCACTCCCCTGTTCATCACAATCTTTTCTTTTTCTGTCCTTTTTTGGGGTGGGTTTGAGAGAGAGAGAGAGAGCCTAGAGAGAGAAAGAGAGAATCGTCAAAACATGAGTCAGTGCATTGCACCAAACTGGAATCTTAGCCCCAGAAGACAAGAACCAGTCGAAGCAGAAGAAGGAAATAGATCCTCCCACGTGCACTCCTTGCAGAACCACCACCACAGTCTCTCTCCTCACCTTACGTCGCGAATATTCAGGTCCGAGAACGAAATTGCCGAGCTAACATGGGAAAATGGTCAGTTAACCATGCATGAGCTGGGCGGGCTACCTCCATGTCCACCCGCCAAACCTGCATGGTGTCAGCCAAGTGACACACTAGAGTCCATAGTCCGCCAAGCCACATTGCACAGACAAATCCCAGCTCCAAATCTCCAGGCCCATGTCTGTGCCAGCTTAGCAGCCGCTGACCGGAAATGTGTTCCGCCGGTGGTCGGTAAACGTCCACGTTCGGATTCAGATCAGGGTGGAAGAAATAATATTTGTTGTAGTAATAGTTTTCAAGACGTTAGCACTTGTGCCAGTGCGAGCGCCACTCTTTGTAGGGAGAATGACACTACTTTAATGACATGGTCATCGTTCGAGTCGCCTCAGAGTTTCAAGACAAAAACGACTGAAGACGATTTGCCTTGGCTCAGTCGATCGGAGAAGCAAGAGGAAGAACTCGATACCAAATGCGAAACAGGCCCATCGAACTCCACGAGAAGAAGCCGAACAGCTGCTGTTCATAATCAATCCGAGAGGAGACGACGAGATAAGATTAACCAGAAGATGAAAGCTCTGCAAAAATTGATCCCCAATGCCTGCAAGACCGACAAAGCGTCGATGCTGGATGAGGTGATTGAATACTTGAAACAACTTCAAGCACAAGTGCAGTTGATGAGCATGAGAAATATACCTCAAATGATCATGCCTTTTGGACTCCAACAGCAACTTCAAATGTCCATAATGGCTCGTATGGGCATGGGGCTCGGCATCGGCAACATGGCTCGAAGCACTCAGCCACTGACTCAGTTTGTTCACCCGACTCCTCCGACGATCGTTCCACCTCCTTTTTTCATGCACCCCATGGTTCAGCCACAAGCTAAGCTGGATCCTGCAGCCAGTGCTTCAGTTCCTCTTTCCGATCCTTTTTGCGCCTATCTAGCACAACAGACGATGAATATGGATCTTTATAATAAGATGGCAGGGCTATACCGCCCGAACACAGCAGCAGGCAGCAGTCCATCTCAGTCAAACAATGTGCAAAGGAAGTAG 1359 48.34 MGIKKQTRKPESLNSNLTPLFITIFSFSVLFWGGFERERESLERERENRQNMSQCIAPNWNLSPRRQEPVEAEEGNRSSHVHSLQNHHHSLSPHLTSRIFRSENEIAELTWENGQLTMHELGGLPPCPPAKPAWCQPSDTLESIVRQATLHRQIPAPNLQAHVCASLAAADRKCVPPVVGKRPRSDSDQGGRNNICCSNSFQDVSTCASASATLCRENDTTLMTWSSFESPQSFKTKTTEDDLPWLSRSEKQEEELDTKCETGPSNSTRRSRTAAVHNQSERRRRDKINQKMKALQKLIPNACKTDKASMLDEVIEYLKQLQAQVQLMSMRNIPQMIMPFGLQQQLQMSIMARMGMGLGIGNMARSTQPLTQFVHPTPPTIVPPPFFMHPMVQPQAKLDPAASASVPLSDPFCAYLAQQTMNMDLYNKMAGLYRPNTAAGSSPSQSNNVQRK 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14197517 14199331 + Bpe021613.1 Bpe07g00768 106537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00768 452 Coils Coil 278 298 - -
Bpe07g00768 452 PANTHER TRANSCRIPTION FACTOR PIF7 54 447 - -
Bpe07g00768 452 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 272 321 IPR011598 GO:0046983
Bpe07g00768 452 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 333 IPR036638 GO:0046983
Bpe07g00768 452 Pfam Helix-loop-helix DNA-binding domain 276 322 IPR011598 GO:0046983
Bpe07g00768 452 CDD bHLH_AtPIF_like 272 332 - -
Bpe07g00768 452 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 54 447 IPR031066 -
Bpe07g00768 452 MobiDBLite consensus disorder prediction 230 285 - -
Bpe07g00768 452 SMART finulus 278 327 IPR011598 GO:0046983
Bpe07g00768 452 MobiDBLite consensus disorder prediction 67 81 - -
Bpe07g00768 452 Gene3D - 267 332 IPR036638 GO:0046983
Bpe07g00768 452 MobiDBLite consensus disorder prediction 43 92 - -
Bpe07g00768 452 MobiDBLite consensus disorder prediction 241 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00768 - - - vvi:100262138 404.445
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01024 Bpe-Chr4:7247387 Bpe07g00768 Bpe-Chr7:14197517 1.22E-35 dispersed
Bpe05g01085 Bpe-Chr5:23327415 Bpe07g00768 Bpe-Chr7:14197517 4.82E-07 dispersed
Bpe07g00768 Bpe-Chr7:14197517 Bpe10g00326 Bpe-Chr10:10770506 2.42E-23 dispersed
Bpe03g00724 Bpe-Chr3:27356221 Bpe07g00768 Bpe-Chr7:14197517 5.63E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g623 . . . Bda15g00616 . . . Bma12g00978 . . . . Car10g00201 . . . . . . . . . . . . . . . . . . . . . . Lsi02g00102 Csa01g00581 Chy12g01515 Cme12g01961 . Blo15g00325 . . Bpe07g00768 . . . . . . . . . . . Cpe18g00775 Bhi08g01118 . . . . . . Cla04g01172 Cam04g1229 Cec01g1740 Cco01g1786 Clacu04g1256 Cmu04g1235 Cre01g1530 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007472 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21657 PF00010 HLH 1.20E-13 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00768 Bpe_Chr07 FPKM 5.28615 6.063483 5.04373 5.149868 4.386785 4.107849 4.943206 6.759435 6.779662 8.965055