Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00795 ATGGGCAATTTATTCTGTTGTATACAAGTAGACCAATCGACAGTAGCTATCAGGGAGCGATTTGGAAAATACGAGGAAGTTTTGGAGCCAGGATGCCATTGCATGCCTTGGTTTTTAGGAGTTCAGGTTGCTGGTCACCTCTCTCTTCGGTTGCAGCAATTGGATGTCAAATGTGAAACCAAGACAAAGGACAATGTGTTTGTAAATGTGGTTGCCTCGATTCAATATCGGGCTTTGTCTGATAAAGCCAGCGATGCTTTTTACAAACTCAGCAACACCAGATCTCAGATCCAGGCCTATGTCTTCGATGTTATTAGAGCAAGTGTTCCAAAGCTGAACTTGGATGATGCTTTTGAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGATGAACTTGAAAAGGTAGCTATGTCTGCCTATGGGTTTGAGATTGTGCAAACTCTCATTGTCGATATAGAGCCCGATGAACATGTGAAGCGAGCAATGAATGAAATAAATGCAGCTGCAAGACTAAGAGTTGCAGCCAATGAGAAGGCGGAGGCTGAGAAAATCCTACAGATTAAACGAGCAGAGGGAGAGGCCGAGGCAAAATATCTCTCTGGACTGGGTATTGCTAGGCAACGACAAGCAATTGTGGACGGATTAAGAGACAGTGTGTTGGGTTTCTCTGTGAACGTTCCCGGAACAACTGCAAAAGACGTAATGGACATGGTGCTAGTGACCCAATATTTCGACACCATGAAAGAAATTGGAGCTGCCTCAAAGTCCTCTGCCGTGTTCATCCCACACGGCCCTGGTGCTGTTCGCGATGTTGCTGCTCAGATCCGCGATGGGCTTCTTCAGGGATCTGCTTCCCACCAGTAG 864 45.83 MGNLFCCIQVDQSTVAIRERFGKYEEVLEPGCHCMPWFLGVQVAGHLSLRLQQLDVKCETKTKDNVFVNVVASIQYRALSDKASDAFYKLSNTRSQIQAYVFDVIRASVPKLNLDDAFEQKNEIAKAVEDELEKVAMSAYGFEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVAAQIRDGLLQGSASHQ 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14341969 14343510 - Bpe021640.1 Bpe07g00795 106564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00795 287 Pfam SPFH domain / Band 7 family 9 183 IPR001107 -
Bpe07g00795 287 SMART PHB_4 5 166 IPR001107 -
Bpe07g00795 287 Gene3D Band 7 domain 40 168 IPR036013 -
Bpe07g00795 287 SUPERFAMILY Band 7/SPFH domain 45 172 IPR036013 -
Bpe07g00795 287 PANTHER HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1-LIKE 1 286 - -
Bpe07g00795 287 CDD SPFH_like_u4 10 279 - -
Bpe07g00795 287 Coils Coil 158 191 - -
Bpe07g00795 287 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 1 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00795 - - - twl:120016656 528.865
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00795 Bpe12g00557 CCT
Bpe07g00795 Bpe12g00557 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00795 Bpe-Chr7:14341969 Bpe12g00397 Bpe-Chr12:9394522 6.40E-120 dispersed
Bpe12g00557 Bpe-Chr12:11412724 Bpe07g00795 Bpe-Chr7:14341969 0 wgd
Bpe13g00465 Bpe-Chr13:12170164 Bpe07g00795 Bpe-Chr7:14341969 1.96E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g504 . . Bda06g00554 Bda15g00593 Bpe12g00557 . . Bma12g01006 . . . Cma11g00163 . Car11g00137 Sed08g1721 . Cpe04g01515 Bhi02g00346 Tan09g2160 Cmetu03g0832 . Hepe09g0137 . . Cla06g01607 Cam06g1781 Cec06g1832 Cco06g1841 Clacu06g1743 Cmu06g1688 Cre06g2504 . . . . . . . . Blo13g00022 . . . Bpe07g00795 . . Bma08g00211 . . Cmo11g00147 . . . . . . . . . . . . . . . . . . . . Lsi06g01485 . Chy02g02517 Cme02g01904
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000975 3 4 3 4 3 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 3 2 3 2 2 2 8 6 2 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00795 Bpe_Chr07 FPKM 19.785866 20.324183 19.646345 20.397217 21.451809 24.977415 21.437 28.255388 26.905243 24.900206