Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00799 ATGACTCTTAAAGGCGGCACCAGCCAAGCCTGCGCCGCATGCAAATACCAGAGGAGAAAGTGCAAGGCCGATTGCCCTCTCGCTCCATTTTTCCCCCCGGACCAACCCAAACTTTTTCAGAATGCGCACAATCTGTTCGGCGTCAGAAACATCTTGAACATCCTCAAGAACTTGGACCACGACCAGAAGTCCGAGGCCATGCGCTCCATCATCTACCAATCCAACATGCGCGACAGGTTTCCCGTCAATGGCTGTTGGGAGGTCATCTGTTATCTCCGGTACCAGTTACAGGCCGTCGAAGAAGAGTTTCACGGCGTCCTGTCCCAGCTAGAGATGCATAGACAGCATCAGTTTGAAGAAGATCTTACATCTCAGCTCGAGCTTGGAATGGGTCCACCCACTAATTCTATCACACTTTTGAACCAAACTACTGTAATCCCAGCACAAAATGAAGCTAATTACAACCCTATTTGCTTTGATTTTAGAGATAGTTTTGCAAATCCTTCGTGGGTTCCACACCCTTTTGCTGATAATAACTTATTTTCTGTCCAAGAAAAAGTTCAAAACTATGATGAAATGCAGCCTTTTTTCGATACCATGGATGATAGGCACTCGTATATCGATTCTAATGAGTCTAGGTAA 642 45.95 MTLKGGTSQACAACKYQRRKCKADCPLAPFFPPDQPKLFQNAHNLFGVRNILNILKNLDHDQKSEAMRSIIYQSNMRDRFPVNGCWEVICYLRYQLQAVEEEFHGVLSQLEMHRQHQFEEDLTSQLELGMGPPTNSITLLNQTTVIPAQNEANYNPICFDFRDSFANPSWVPHPFADNNLFSVQEKVQNYDEMQPFFDTMDDRHSYIDSNESR 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14363891 14364532 + Bpe021644.1 Bpe07g00799 106568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00799 213 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Bpe07g00799 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 190 - -
Bpe07g00799 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 7 190 - -
Bpe07g00799 213 Pfam Lateral organ boundaries (LOB) domain 10 104 IPR004883 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00799 - - - mesc:110617644 256.529
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00799 Bpe12g00562 CCT
Bpe07g00799 Bpe12g00562 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00799 Bpe-Chr7:14363891 Bpe15g01223 Bpe-Chr15:20852868 9.16E-26 dispersed
Bpe12g00562 Bpe-Chr12:11471464 Bpe07g00799 Bpe-Chr7:14363891 6.60E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g485 . . Bda06g00557 Bda15g00586 Bpe12g00562 . . Bma12g01009 . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0868 . Cone13ag0095 Cone19ag0098 . . . . Blo13g00027 Blo15g00256 . . Bpe07g00799 . . Bma08g00200 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006247 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 0 1 4 1 1 1 1 1 1 1 1 1 1 1 2 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21665 PF03195 LOB 5.60E-33 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00799 Bpe_Chr07 FPKM 0.543084 0.394475 0.17026 0.0 0.440796 0.0 0.395181 0.0 0.373678 0.0