Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00800 ATGGGCGGCGCCGCCGACGATTCTCCTAAATGCTCTGTTGCCTCCTCAAAGGAAGATGAAGCGGCGAAGGGGACGCCGTCCGCCACTCCCGTTGCGGACTCTCTGTCAAGCGTTCTGCTCTCCGACGCTCCGATTCTCTTCCTTGTTAAGTTCCACAAAGCGCTGCGGACTGAACTATCGGATCTCCGCCGTCTGACTCTGTCTGCGTCGGAGAATGGATCCTACGGCGGTGACCTGGTTCCGGAGTTGCTGCGGCGGTTCGAGCTCCTTAAAATTGCTTATAAGTACCATTTTGCTGCGGAAGAAGAGGTTATCTTCCCTGCTTTAGATGTTCATACAAAAAATGTAGCAGGCACGTATTTATTAGAACATGAGAGCATCGATAGTCTCTTCAACTCCATTTTTCATCTCTTGGATGTAATAAAGATGGAAGGGACAAATATTATCAAGCCATTTCAAGAACTTGTACTCTGTTTGGGAACAACACAATCGTCTATGTGCCGACATATGCTTAAAGAAGAAGAGCAGGTTTTTCCATTGCTGATGCAACAGCTCTCGCCTGCAGAACAGGCTTCACTGATGTGGCAGTTCTTCTGTAGTGTTCCTGTAATATTGCTAGAGGATCTTTTGCCATGGATGATGTCTTTTCTATCTTCAGACGAACAAGGAGAAGTTAAACAATGGCTTGAGGACCTGGTACCCAGAGAAACTTTACTGCAGGAGGTAGTGGTATCTTGGCTTGGTGGCAACAAAAGACCATCTACTGAAGCGATCATCAGAGATCAATGTCGAGGTGAAATGATGTCTCTACAAAACGATAATGGAGAAAACCCCATTGACGGTCTTCATCTTTGGCATAGTGCATTAATTAAAGACTTGAAGAAAATTTTGGAGGAGCTCTTACAATTAAGACTGAAGGAAATTTTGGAGGAGGTCTTGCAATCAAGAAGAGCTAATCCTTTACCAAATTTAGATTCCATCATTGTACGGATTAAATTCCTAGCCGATGTCGTTTTATTCTACAGCAATGCGCTGGAGAAATTCTTTTATCAGGTAATAAGTCAACGTGCTGATGTCTCCCTGCCTTCCATAAGTGAAACATTTCTTCAAGCTTGCCACATGGAAGGTCTACAGAGGCTCTTGCATTGTAATGTTCAAGACAGTACAATCTTGTTGTCGAAGTTTTTGCAGAATCTTTGCAGGGAACTTGAGTCCTTTTTGGAGGGAATTAAGAAAAACATCTCTTTTCTTGAAGCAGAGGTTTTCCCTGACATCAGAAAGAATTGCAACTATAAAATGCAGCAGCAGCTTTTGTACATGAGTCTCCATACGTTGCCACTTGGGTTGCTAAAGTGTGTCACTACATGGTTTTCTGCTCACTTATCTGAGGATGAATTCAGGTCGCTCTTTCACAATATACAAAGCGAAGGATCCTGGGTGGATAATTCATTTGCATCCCTTCTACATGAGTGGTTACGCATTGCATATTTGGGAAAAGCGTCTCCTGTGAGTTTTGGATTATATTTGGAGCAAATGTTCAAGACTAGGAACTTGTTTCTAAATGAGAAATTCAATGGAGGTTCTGGATCTTCATCCTTAACCTTAAATGTTCGGTCTTGTGAAGCATCAAGCTCTTTGGGAGTTGAAACATCATACTCCAGCGGTATCAATATGCATATATATTTTCCAGAAGCACTGAAGACATCACAACCCTTTCCAAAATTGCACGACGAGAATCACCCAGATGGGTCGCCAATAGATATCATCTTGTTCTTCCACAAAGCACTAAAGAAGGATCTGGATTACCTAGTATCTTGTTCTCTTCAACTGGCTGAAAAGGTCGAAATCCTTGATGATTTCAAAATACGATTCCAGCTTTTCCGTGTTTTACATCAGATTCACAGTGATGCAGAGGACCAAATTGCCTTCCCCGCATTAGAGACAAAAGGGCAAGTGGAGAATATTTGTGACTCTTACATCATTGATCATAAGTTGGAAATGGAATACTTTGGTAACATATCTTCCATTCTTGATGAATTGACTCAACTGCATGCTTCAGCTTCAGATATCGGCATGAGTTCAAAGAAGACTAACCCTGAAATGTCCAGACGTGAGCAGATTTGTCTAGGACTACATGACAAGTTCAAATCACTGCACAAGTTACTCATTGACCACATTAATCATGAAGACATTGAAATTTGGCCTTTGTTTAAGGAACGCTTCTCCATTGAAGAGCAGGAGCAAATCATAGGATCCATACTTGGAAGAACTAGAGCCGAAATGTTGCAAGATATGATCCCATGGTTAATGGAGTACATTACGCCCGAAGAACAATGGCAGATGATGTCTTTGTGGCGCAAGGTTACTAGACATACCATGTTTGATCAATGGTTAGCAGAATGGTGGGAGGGCATTGATGCAGCTAAGGTGACAGAAGTGTTTGATGTCCCTTCTACACTGGTTGAAGATCCGTTGGAGCTAGTCTTGGCATATCTCTCAAAGGAAGGTCATACAGTGAATGGCGAAAATCTGAATCAGAAAAGCGTTAGTTTCTTGCAAGAGCATCTCGATTACTCTGAGCAGCTGGAAATGTGTAATAATTACGAAGTAAAGAAAACACTTGCTGATCCAGATACTGAGAAATGTTTGGATGATGCTATAGTCGTTTTTGAGAGCGACGAGAAAAAGGGGGCTGATCTCAACGACCATATCCCAGAATTGAGACAGCATTTAAAAGAAAGTGTAAAGTCGAAACATCAAGAACATATTCTTGCAATGAGTCAAGAAGATTTGGAGGCTGCATTAAGAAAAGTATGCAGTGATTCTTCCTTGAATTTGCAAGAAAAATCATTTATAATGCAGAACTTGATGGCGAGCCCTTGGACACTAAAACAACGACTTACATATTCAGAAATGAATGTATCAAGAGATGACCAAGGAATTCAAGGTCAGCAGCCATCTTACAGAGATTCCCATGACCAAACATTTGGCTGCAAACATTACAAAAGAAATTGTAAGCTTTTTGCACCCTGTTGCAATCAGCTGTATACATGCGTACACTGTCATGATGAGGAGACTGGCCACACGGTAGAGAGAAAGCATATAACAAAGATGTTGTGCATGAAATGCTTGGTAGTTCAGCCAATTGGAAGCACGTGTTCGACAGCCTCCTGTGCTGGTTTTTGTATGGCCAAATACTTTTGCCGGATATGCAAATTGTTTGATGATGAGAGGAATATCTATCACTGCCCCTACTGTAACATATGCAGGGTTGGGGAGGGATTGGGGAAAGACTACTTTCACTGCATGAACTGCAATGCCTGCATGTCTCGGACACTTGCAGTGCACATTTGTAGAGAAAAGTGTTTGGAGGACAATTGTCCGATTTGCCATGAATATATCTTCACGTCCACTGCTCCAGTGAAGGCATTACAATGTGGTCATATAATGCATTCGGATTGTTTTCGGAAATACACTGAAACTAACTACATTTGCCCCATTTGTAGCAAGTCCCTTGGAGATATGCAGGTCTACTTTAGGATGCTCGATACTCTCCTCGAAGAAGAGAAGATTCCGGATGAATATGCCGATAAAACGCAGGCCATACTATGCAATGATTGTGAGAAGAGAGGAACAGCTCGCTTCCATTGGTGTCACCTGAAATGTCCACAATGTGGTTCGTACAATACCAGACCTCTGTGA 3702 42.17 MGGAADDSPKCSVASSKEDEAAKGTPSATPVADSLSSVLLSDAPILFLVKFHKALRTELSDLRRLTLSASENGSYGGDLVPELLRRFELLKIAYKYHFAAEEEVIFPALDVHTKNVAGTYLLEHESIDSLFNSIFHLLDVIKMEGTNIIKPFQELVLCLGTTQSSMCRHMLKEEEQVFPLLMQQLSPAEQASLMWQFFCSVPVILLEDLLPWMMSFLSSDEQGEVKQWLEDLVPRETLLQEVVVSWLGGNKRPSTEAIIRDQCRGEMMSLQNDNGENPIDGLHLWHSALIKDLKKILEELLQLRLKEILEEVLQSRRANPLPNLDSIIVRIKFLADVVLFYSNALEKFFYQVISQRADVSLPSISETFLQACHMEGLQRLLHCNVQDSTILLSKFLQNLCRELESFLEGIKKNISFLEAEVFPDIRKNCNYKMQQQLLYMSLHTLPLGLLKCVTTWFSAHLSEDEFRSLFHNIQSEGSWVDNSFASLLHEWLRIAYLGKASPVSFGLYLEQMFKTRNLFLNEKFNGGSGSSSLTLNVRSCEASSSLGVETSYSSGINMHIYFPEALKTSQPFPKLHDENHPDGSPIDIILFFHKALKKDLDYLVSCSLQLAEKVEILDDFKIRFQLFRVLHQIHSDAEDQIAFPALETKGQVENICDSYIIDHKLEMEYFGNISSILDELTQLHASASDIGMSSKKTNPEMSRREQICLGLHDKFKSLHKLLIDHINHEDIEIWPLFKERFSIEEQEQIIGSILGRTRAEMLQDMIPWLMEYITPEEQWQMMSLWRKVTRHTMFDQWLAEWWEGIDAAKVTEVFDVPSTLVEDPLELVLAYLSKEGHTVNGENLNQKSVSFLQEHLDYSEQLEMCNNYEVKKTLADPDTEKCLDDAIVVFESDEKKGADLNDHIPELRQHLKESVKSKHQEHILAMSQEDLEAALRKVCSDSSLNLQEKSFIMQNLMASPWTLKQRLTYSEMNVSRDDQGIQGQQPSYRDSHDQTFGCKHYKRNCKLFAPCCNQLYTCVHCHDEETGHTVERKHITKMLCMKCLVVQPIGSTCSTASCAGFCMAKYFCRICKLFDDERNIYHCPYCNICRVGEGLGKDYFHCMNCNACMSRTLAVHICREKCLEDNCPICHEYIFTSTAPVKALQCGHIMHSDCFRKYTETNYICPICSKSLGDMQVYFRMLDTLLEEEKIPDEYADKTQAILCNDCEKRGTARFHWCHLKCPQCGSYNTRPL 1233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14365675 14372249 - Bpe021645.1 Bpe07g00800 106569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00800 1233 SMART ring_2 1127 1168 IPR001841 -
Bpe07g00800 1233 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 36 1231 - -
Bpe07g00800 1233 Gene3D nmb1532 protein domain like 37 197 - -
Bpe07g00800 1233 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 36 1231 - -
Bpe07g00800 1233 ProSiteProfiles Zinc finger RING-type profile. 1127 1169 IPR001841 -
Bpe07g00800 1233 ProSiteProfiles Zinc finger CTCHY-type profile. 1063 1126 IPR017921 -
Bpe07g00800 1233 Pfam CHY zinc finger 998 1073 IPR008913 GO:0008270
Bpe07g00800 1233 Pfam Ring finger domain 1125 1168 IPR001841 -
Bpe07g00800 1233 CDD Hr-like 587 735 - -
Bpe07g00800 1233 Pfam Hemerythrin HHE cation binding domain 47 181 IPR012312 -
Bpe07g00800 1233 Gene3D nmb1532 protein domain like 578 783 - -
Bpe07g00800 1233 SUPERFAMILY Zinc hairpin stack 1064 1118 IPR037275 -
Bpe07g00800 1233 CDD RING-H2_Pirh2 1126 1169 - -
Bpe07g00800 1233 MobiDBLite consensus disorder prediction 1 31 - -
Bpe07g00800 1233 Gene3D - 1197 1233 - -
Bpe07g00800 1233 SUPERFAMILY RING/U-box 1113 1173 - -
Bpe07g00800 1233 SUPERFAMILY CHY zinc finger-like 989 1054 IPR037274 GO:0008270
Bpe07g00800 1233 Pfam Zinc-ribbon 1174 1231 IPR039512 -
Bpe07g00800 1233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1120 1171 IPR013083 -
Bpe07g00800 1233 CDD Hr-like 48 179 - -
Bpe07g00800 1233 Coils Coil 400 420 - -
Bpe07g00800 1233 ProSiteProfiles Zinc finger CHY-type profile. 991 1060 IPR008913 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00800 K16276 K16276, BTS; zinc finger protein-like protein - csv:101212459 1314.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00800 Bpe-Chr7:14365675 Bpe07g01039 Bpe-Chr7:15895945 1.68E-14 dispersed
Bpe07g00800 Bpe-Chr7:14365675 Bpe05g00846 Bpe-Chr5:21662122 1.53E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g483 . . . . . . . . . . Cma10g00305 . Car10g00290 . Sed08g0191 . . Bhi02g00363 Tan09g2172 Cmetu02g1853 . Hepe09g0145 . . . . . . . . . . . Cone13ag0096 Cone19ag0099 . . . . . Blo15g00295 . . Bpe07g00800 . . . . Cmo10g00326 . . . . . . Cpe18g00810 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00800 Bpe_Chr07 FPKM 4.092885 4.413478 5.027087 4.786123 6.574623 7.146505 5.804576 6.680851 7.024827 7.266049