Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00805 ATGGTGCGAAGTGTTTGCTGCAAAAAGCTGAATGTTAAGAGGGATCTTTGGATCGACGAAAAAAATCTCGCTTATTCGCCCACGCAGGGAAGGGCCAGCTCGAATGGTATCGCGAAGAAAACAGGACTTAGAAGATGTGGGAAGAGCTGCAGGCTTAGATGGAGTAATCATCTTAAGCCAGATTTTAACGACGATAGTTTCAATCTTCAAGAGGAGGAGTTGATCATCAGGCTTCATGCAACCATTGGAAGCAGGTGGACAATAATAGCTCAGCAACTTCCAGGAAGAACAGATAATGAAGTGAAGAACTACTGGAACTCCAAGCTCAGGAAGAAGCTCACTGATATGGGCATTGATCCAGTCACTCACCGACCATTTTCTCAGGTCCTCGCCGACTATGGAAGCATCGGCGGCCTCCCAAAGACCACCAACCGAACCGCCTCTCTTTCAAAAGACTTCAAAAACCCTGTGTTCACCAAACCCGACCCGTTTCCGTACCTCAAAACCCACTCCTTCGACCTTCTTTCCGAGCTTCAAGCCGTAAAAATGGTGGCCGATGCCTCCAGCCTGGTATCTCAGTCTGCATCTTCTTCTTCTTCTTCTTCTAGTTGTTCTACTGCTTTTAGTTGGAGGGATTTTCTCCTCGAAGATGTAATTCTGCAGACTGATAATCCGAAAGAGCCGGAAAATGGATCTGAACTCCCGGTGGTTTTACCGCCAAACGAGAAGACTGGAGAGGGAGGTGAAAACCAGTGCAGTAGGAATGAGGAAGAAGGTTCGTTCTTCTGCCATGGGAATCGTTTTATCGAAGCTATCCTGGATCAAGACGACAAGATGTTTTTAGACTTTCGCGATCTTCTAGAAGAACCATTCTAG 876 46.69 MVRSVCCKKLNVKRDLWIDEKNLAYSPTQGRASSNGIAKKTGLRRCGKSCRLRWSNHLKPDFNDDSFNLQEEELIIRLHATIGSRWTIIAQQLPGRTDNEVKNYWNSKLRKKLTDMGIDPVTHRPFSQVLADYGSIGGLPKTTNRTASLSKDFKNPVFTKPDPFPYLKTHSFDLLSELQAVKMVADASSLVSQSASSSSSSSSCSTAFSWRDFLLEDVILQTDNPKEPENGSELPVVLPPNEKTGEGGENQCSRNEEEGSFFCHGNRFIEAILDQDDKMFLDFRDLLEEPF 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14401411 14402576 + Bpe021650.1 Bpe07g00805 106574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00805 291 MobiDBLite consensus disorder prediction 223 254 - -
Bpe07g00805 291 SMART sant 63 111 IPR001005 -
Bpe07g00805 291 SUPERFAMILY Homeodomain-like 42 117 IPR009057 -
Bpe07g00805 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Bpe07g00805 291 PANTHER F14D16.11-RELATED 1 291 - -
Bpe07g00805 291 Gene3D - 65 124 - -
Bpe07g00805 291 PANTHER F14D16.11-RELATED 1 291 - -
Bpe07g00805 291 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Bpe07g00805 291 Gene3D - 19 63 - -
Bpe07g00805 291 CDD SANT 66 109 IPR001005 -
Bpe07g00805 291 Pfam Myb-like DNA-binding domain 66 107 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00805 K09422 MYBP; transcription factor MYB, plant - vvi:104882320 279.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00805 Bpe-Chr7:14401411 Bpe08g01077 Bpe-Chr8:12912571 1.35E-48 dispersed
Bpe02g01471 Bpe-Chr2:18019220 Bpe07g00805 Bpe-Chr7:14401411 7.24E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g475 . . Bda06g00561 . . . . Bma12g01016 . . Cma10g00168 . Car10g00157 . . . . Bhi02g00371 . . . . . . Cla06g01620 . . . . . . . . . . . . . . . . . . Bpe07g00805 . . . . Cmo10g00180 . . . . . . . . . . . . . . . . . . . . . Lsi06g01500 Csa01g00199 Chy02g02532 Cme02g01916
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013204 1 1 0 1 1 1 1 0 1 1 1 1 1 1 0 1 1 0 0 1 1 1 1 1 1 1 1 2 1 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21667 PF00249 Myb_DNA-binding 5.90E-11 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00805 Bpe_Chr07 FPKM 36.285576 39.1525 48.716263 49.373615 23.090099 21.706621 23.172323 50.338985 49.784847 48.88483