Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00810 ATGGAGCTTCAGAATACAGTGAAGGAAGCCCTAAATGCACTCTACCATCACCCTGATGATACCGTTCGTATGCAGGCCGATCGCTGGCTCCAAGACTTTCAGCGCACTCTTGATGCCTGGCAGGTTGCTGATAATTTGCTACACGATTCTACTAGCAATCTCGAGACGTTGATATTTTGTTCTCAGACCCTTAGAAGCAAGGTACAACGAGATTTTGAAGAGCTGCCTTCAGAAGCATTTCGCCCCTTACGTGATTCATTGAATAACTTATTGAGGAAGTTTCACAAGGGACCTCCTAAAGTTAGAACTCAGATTAGCATTGCTGTCGCTGCATTGGCTGTACATGTTCCTGCGGAAGATTGGGGAGATGGTGGAATTGTGAATTGGCTTCGAGATGAGATGAATTCACATCCAGAATATGTTCCTGGATTTTTGGAGTTGTTAACTGTTTTGCCAGAGGAAGTGTATAACTATAAGATAGCAGCTCGTCCAGATAGACGGCGTCAATTTGAAAAAGAGCTCACAACACAAATGGAAGTTGCTCTTAACATTTTGACAGCATGTTTGAATATTAATGAGCTTAAGGAGCAGGTTCTTGAAGCATTTTCTTCTTGGCTTCGTTTAAAGCATGGGTTTCCGGGGTCTGTGCTTGCTTCTCATCCATTGGTGCTCACTGCTCTCACAAGCTTAAATTCAGAGATAATTTCAGAGGCGTCAGTTAATGTTATTTCTGAATTGATACACTACTCAGCATCTGGAAATTCTGGTGGTGTTCCTGTTCACATGCCTTTAATTCAGGTTATTGTGCCACAAGTTATGAATTTAAAGGTGCAGCTTCGAGATTCTTCAAAGGATGAAGAAGATGTGAAGGCCATTGCTCGCTTATTTGCTGACATGGGTGATTCATATGTTGAATTGATTGCAAATGGTTCTGATGAATCAATGCTTATTGTCCATGCACTTTTGGAAGTTGCTTCACACCCAGAATATGATATTGCCTCAATGACATTCAATTTTTGGCATAGTCTTCAGGTCAACATGACCAAAAGAGATGCGTATGTTTCTTTTGGTGATGATTCTTCTGTTGAAGCCGAGAGGAATAGAAGGTTGCATATATTTCGCCCGGTGTATGAGTCCCTTGTTTCCTTGGTTAGTTTCCGAGTTCAATATCCTAAAGACTATCAAGGCTTATCTTATGAGGACCTCAAAGAGTTTAAGCAAACAAGATATGCCGTTGCAGATGTTTTAATTGACGCTGCCTCTGTTTTGGGAGGTGATCTGACGCTGAAAATTCTCTATGTGAAGCTTGTGGAGGCTATTGCTAGCTGTGGCAATGATGAACGAAGTGAATGGCGTCCAGCAGAGGCTGCTTTATTTTGTATTCGAGCGATATCAAAATATGTTTCGTACAATGAAACTGAAGTAATGCCTAAGATCATGGATTTACTTGCAAAACTACCTCGACAAGCCCAACTGCTTCAGACAGTCTGTTTAACAGTTGGGGCATATTCAAAATGGTTTGATGCTTCATCAAGTGGATTGGCTGTATTACCTTCAGTAATAAATATCCTCATGAGTGGTATGGGAACATCAGAAGATTCTGCTGCTGCTGCAGCTTTGGCATTCAGACACATATGTGATGATTGCCGGAGAAAACTTTGTGGATCGTTGGATGGTCTCTTCCACATTTACAATAGTGCTGTTAATGGGGAAAGTAGTTTTAAAATATCTGCTGAGGACTCATTGCATCTGGTGGAGGCATTAAGCATGGTTATCACCGAACTTTCTCCAGACAATGCCAAGAGAGCAATGGAGGCATTGTGTGTGCCAGTTGTCACTCCTCTGCAGGAAATTGTCAATCAAGGCCCCGACTTATTAAATAAGAAATCTGCCGAGTTAACAGTTCATATTGATCGGTTTGCATACATCTTCAGATATGTAAATCATCCTGAAGCGGTGGCTGATGCAATTCAAAGGCTTTGGCCAATTTTCAAAGCCATCTTTGACCTCCGGGCATGGGACATGCGAACAATGGAGTCTCTTTGTCGAGCATGCAAATATGCTGTGAGAACCTCTGGAAGATTCATGGGTATTACCATTGGAGCTATGTTAGAGGAGATTCAAGGCCTCTTTAGACAGCATCATCAACCTTGTTTTCTTTATCTTTCCAGTGAAGTTATTAAAATATTTGGTTCTGATCCAACTTGTGCAAGTTATTTACAAAATTTGATTGAAGCACTATTCATGCACACTACGCTGCTACTGACAAATATTCAGGAATTTACAGCCCGACCGGACATTGCGGATGATTGCTTTTTGTTGGCATCAAGATGTATACGCTACTGTCCTCAATTATTTATTCCATCAGCAGTGTTTCCATCATTAGTAGATTGCTCAATGATTGGAATCACAGTCCAGCATAGGGAAGCCTGCAATTCTATATTGACCTTCTTAGGAGATATTTTTGATCTTACAAATTCTGGCGAAAGAGAACAGTACTTGCTCATCAGAGATACAGTAATCAAACCTCGAGGTCCAGTCATCACAAGAATTTTGGTAGCATCATTAACCGGAGCTTTACCTAGTTCTCGATTAGAACCGGTTACATACACTCTATTGGCTCTAACTCGAACTTTTGGCCTGGAAGCACTTGAGTGGGCGAAGGCAAGTGTTTCACTAATTCCATTGACTGCAGTCACGGAAAAGGAGCGTGCGAGATTTTTGAAAGCATTGGCTGATGCAGCCTCCGGATTTGATATAAACACACTAACAAATCCAATTGAAGAGCTATCGGATGTTTGCCGGCGAAATCGAAATGTTCAAGAGATTGTGCAAGGAGCTTTAAGGCCTCTCGAGTTGAATTTGGTACCTGTATCATAG 2880 41.56 MELQNTVKEALNALYHHPDDTVRMQADRWLQDFQRTLDAWQVADNLLHDSTSNLETLIFCSQTLRSKVQRDFEELPSEAFRPLRDSLNNLLRKFHKGPPKVRTQISIAVAALAVHVPAEDWGDGGIVNWLRDEMNSHPEYVPGFLELLTVLPEEVYNYKIAARPDRRRQFEKELTTQMEVALNILTACLNINELKEQVLEAFSSWLRLKHGFPGSVLASHPLVLTALTSLNSEIISEASVNVISELIHYSASGNSGGVPVHMPLIQVIVPQVMNLKVQLRDSSKDEEDVKAIARLFADMGDSYVELIANGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVNMTKRDAYVSFGDDSSVEAERNRRLHIFRPVYESLVSLVSFRVQYPKDYQGLSYEDLKEFKQTRYAVADVLIDAASVLGGDLTLKILYVKLVEAIASCGNDERSEWRPAEAALFCIRAISKYVSYNETEVMPKIMDLLAKLPRQAQLLQTVCLTVGAYSKWFDASSSGLAVLPSVINILMSGMGTSEDSAAAAALAFRHICDDCRRKLCGSLDGLFHIYNSAVNGESSFKISAEDSLHLVEALSMVITELSPDNAKRAMEALCVPVVTPLQEIVNQGPDLLNKKSAELTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDLRAWDMRTMESLCRACKYAVRTSGRFMGITIGAMLEEIQGLFRQHHQPCFLYLSSEVIKIFGSDPTCASYLQNLIEALFMHTTLLLTNIQEFTARPDIADDCFLLASRCIRYCPQLFIPSAVFPSLVDCSMIGITVQHREACNSILTFLGDIFDLTNSGEREQYLLIRDTVIKPRGPVITRILVASLTGALPSSRLEPVTYTLLALTRTFGLEALEWAKASVSLIPLTAVTEKERARFLKALADAASGFDINTLTNPIEELSDVCRRNRNVQEIVQGALRPLELNLVPVS 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14419899 14431143 + Bpe021655.1 Bpe07g00810 106579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00810 959 Pfam Importin-beta N-terminal domain 26 91 IPR001494 GO:0006886|GO:0031267
Bpe07g00810 959 PANTHER TRANSPORTIN MOS14 3 955 - -
Bpe07g00810 959 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 3 955 - -
Bpe07g00810 959 Pfam Exportin 1-like protein 98 243 IPR013598 -
Bpe07g00810 959 Gene3D - 2 933 IPR011989 -
Bpe07g00810 959 SMART IBN_N_2 26 93 IPR001494 GO:0006886|GO:0031267
Bpe07g00810 959 SUPERFAMILY ARM repeat 1 834 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00810 K15436 TRPO3, MTR10; transportin-3 - csv:101215103 1672.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01284 Bpe-Chr2:16311340 Bpe07g00810 Bpe-Chr7:14419899 3.50E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g421 . . Bda06g00568 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe07g00810 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008466 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00810 Bpe_Chr07 FPKM 38.705502 40.038208 15.674522 16.999138 3.118014 2.131316 2.785396 21.219339 18.199591 19.472391