Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00835 ATGTCTGGAGTTTCCAACGACGTAGTAAACGAAGCGGTAGAGACCCAAAATTTCACATCTTTTAAGGAAGTGTTCGTGGAAAATAACTCACAGAAGGGTATTTTGAATCCGCAAAGTTCTGCATGTCCAACTGTCCATGCCCTAAATGACGGGTTGATTGACACCTCCATTGATAAGCTTTATGAAAGTTTATGTGATTTGCAGAGTTCTGAACCATCCACTTCGAGGCATAGCTTTGGATCAGATGGCGAGGAGTCTCTGATTGATTCAGAGCTGCACCATCTTGTTGGAGGAGACGTGAGGGAGGTAGAGATGATAAGAGAAGAAGCAGAAGGGACAAAGACACCAGATGGAAACACACTTTTCACAGAGAAGAGTTCTTCTTTGGATAAGATGTCAGCAAAGATGGATAAAAACCAATCTGTGTCATCAAGCCCCTTGAGAAATGAAAAGAATCGGAAAAAACATAATCATGTCAAAAAACAGAAAAACTCTTTGTCTGGAGGTTTGAGATCGAAGAACGGAATCGAGGATTCAGTCGTATCGGGTCTGGATAATCCTGATCTAGGACCTTATTTACTCAAACAAGCTAGAAATTTGGTTTCTTCTGGAGAAAACCTGCAAAAGGCTCTTGAACTGGCTCTTCGAGCTGTGAAATCATTCGAATCATGCGCAGATAAGAAAAACAGTTTAGAATTCGTCATGTGTTTGCACGCCACAGCAGCAATCTACTGCAGCTTAGGCCGCTATTCCGAGGCAATTCCTCTTTTGGAATACTCCATTGAGATTCCATCTCTTGAAGAGAGCAAAGAGCGAGCTCTAGCTAATTTTGCCGGTCAAATGCAGTTAGGCGATACATATGCAATGTTGGGTCAGCTCGATAATTTGATATCTTGTTATACGAAGGGATTGGAAATCCAGAAACGGGTTTTAGGAGGAAATGATATTAGAGTTAGTATGACTTGTAGGTATTTATCAGAAGCACATGTTCAAGCTTTGCAATTTGTCGAAGCGGAAAAGATCTGTCAAATGGCTCTCGATATTCATAAACAGAATGGAGCTATGGGTTCTCTCGAAGAAGCTGCAGATAGGAGACTAATGGGTCTAATTTGTGAGACAAAGGGAGACCATGAAGCTGCTCTTGAGCACCTGGTTTTGGCTAGCATCGCTATGGTGGCAAATGGGCAGGAAATGGAGGTAGCTTCTGTTGATTGCAGTATTGGCGATATATATTTATCGTTATCTCGATATGGCGAGGCCGTTTTCGCTTATCAGAAAGCGCTCACAGTTTTCAAGACCACTAAAGGAGAGAATCATCCAGCCGTTGCTTCGGTTTTCGTTCGGTTGGCTGATTTGTGTAACAGGACTGGAAAAATAAGGGAATCAAAATCATATATTGAAAACGCTTTCCGAATTTACGAAAACCCAATTGGTGCTGTTCATATTGAAGAGATTGCTTTCGGTTTGGTCGATCTATCTGCCATTTATGAATCGATGAACGAGCACGACAAGGCGCTTAAATTGTTAACCAAGGCGTTAAGTATGTACGACAATTCACATGGCCAACAAAACACAATTGCCGGAATCGAAGCTCAAATGGGTGTTCTTTACTACATTTTGGGAAACTACTCAGAATCCTACAACTCCTTCGAGCGTGCCACTTCGAAGTTACGATCGAGTGGAGATAAAAAATCGGCCTTTTTTGGGATTGCGATTAACCAAATGGGGCTTGCTTGTGTGCAGTGTCGTGCCATAAGTGAAGGAGTGGAGTTGTTTATAGAAGCAAAGAACATATTGGAACAAGAGTATGGACCTTATCACCCTGATACTCTTGGAGTCTACTGCAATCTGGCTGCAGCTTATGATGCGATTGGGAGGTTGGAAGATGCAATAGAAACATTGGAGTATGTGGTTAGGATGAGTGAAGAAAAAGTGGGGACGGCCAATCTGGATGTCCACGACGAGAAAAAGATGTTGAACGAGTTGTTGAAAGAAGCCGGCAAAGTTCGAAGCAGGAGAGGTCGATCCCTCGAGATTCTTCTTGGCGCCAACTCTCGTGCTGTAAACAACGACAACGGGATTAAGGTTTGA 2091 42.71 MSGVSNDVVNEAVETQNFTSFKEVFVENNSQKGILNPQSSACPTVHALNDGLIDTSIDKLYESLCDLQSSEPSTSRHSFGSDGEESLIDSELHHLVGGDVREVEMIREEAEGTKTPDGNTLFTEKSSSLDKMSAKMDKNQSVSSSPLRNEKNRKKHNHVKKQKNSLSGGLRSKNGIEDSVVSGLDNPDLGPYLLKQARNLVSSGENLQKALELALRAVKSFESCADKKNSLEFVMCLHATAAIYCSLGRYSEAIPLLEYSIEIPSLEESKERALANFAGQMQLGDTYAMLGQLDNLISCYTKGLEIQKRVLGGNDIRVSMTCRYLSEAHVQALQFVEAEKICQMALDIHKQNGAMGSLEEAADRRLMGLICETKGDHEAALEHLVLASIAMVANGQEMEVASVDCSIGDIYLSLSRYGEAVFAYQKALTVFKTTKGENHPAVASVFVRLADLCNRTGKIRESKSYIENAFRIYENPIGAVHIEEIAFGLVDLSAIYESMNEHDKALKLLTKALSMYDNSHGQQNTIAGIEAQMGVLYYILGNYSESYNSFERATSKLRSSGDKKSAFFGIAINQMGLACVQCRAISEGVELFIEAKNILEQEYGPYHPDTLGVYCNLAAAYDAIGRLEDAIETLEYVVRMSEEKVGTANLDVHDEKKMLNELLKEAGKVRSRRGRSLEILLGANSRAVNNDNGIKV 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14559854 14562201 + Bpe021679.1 Bpe07g00835 106604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00835 696 Pfam Tetratricopeptide repeat 400 475 - -
Bpe07g00835 696 Pfam Tetratricopeptide repeat 571 642 - -
Bpe07g00835 696 Gene3D Tetratricopeptide repeat domain 277 387 IPR011990 GO:0005515
Bpe07g00835 696 MobiDBLite consensus disorder prediction 116 147 - -
Bpe07g00835 696 ProSiteProfiles TPR repeat profile. 401 434 IPR019734 GO:0005515
Bpe07g00835 696 Gene3D Tetratricopeptide repeat domain 114 271 IPR011990 GO:0005515
Bpe07g00835 696 SMART tpr_5 401 434 IPR019734 GO:0005515
Bpe07g00835 696 SMART tpr_5 319 352 IPR019734 GO:0005515
Bpe07g00835 696 SMART tpr_5 486 519 IPR019734 GO:0005515
Bpe07g00835 696 SMART tpr_5 277 310 IPR019734 GO:0005515
Bpe07g00835 696 SMART tpr_5 234 267 IPR019734 GO:0005515
Bpe07g00835 696 SMART tpr_5 527 560 IPR019734 GO:0005515
Bpe07g00835 696 SMART tpr_5 611 644 IPR019734 GO:0005515
Bpe07g00835 696 SMART tpr_5 443 476 IPR019734 GO:0005515
Bpe07g00835 696 MobiDBLite consensus disorder prediction 109 173 - -
Bpe07g00835 696 Pfam Tetratricopeptide repeat 236 258 IPR019734 GO:0005515
Bpe07g00835 696 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 6 683 - -
Bpe07g00835 696 SUPERFAMILY TPR-like 232 382 IPR011990 GO:0005515
Bpe07g00835 696 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Bpe07g00835 696 SUPERFAMILY TPR-like 405 641 IPR011990 GO:0005515
Bpe07g00835 696 Gene3D Tetratricopeptide repeat domain 573 672 IPR011990 GO:0005515
Bpe07g00835 696 Gene3D Tetratricopeptide repeat domain 388 572 IPR011990 GO:0005515
Bpe07g00835 696 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 6 683 - -
Bpe07g00835 696 ProSiteProfiles TPR repeat profile. 611 644 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00835 - - - csin:114309530 869.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00954 Bpe-Chr4:6437693 Bpe07g00835 Bpe-Chr7:14559854 0 transposed
Bpe05g00710 Bpe-Chr5:20662245 Bpe07g00835 Bpe-Chr7:14559854 0 transposed
Bpe06g00428 Bpe-Chr6:15660771 Bpe07g00835 Bpe-Chr7:14559854 1.68E-34 transposed
Bpe13g00222 Bpe-Chr13:10243762 Bpe07g00835 Bpe-Chr7:14559854 0 transposed
Bpe11g01549 Bpe-Chr11:11526139 Bpe07g00835 Bpe-Chr7:14559854 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00835 Bpe_Chr07 FPKM 0.850218 1.218619 1.219721 0.997569 3.510128 4.176271 4.00324 1.256799 1.494361 1.249368