Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00846 ATGGCTTTAAGCCCTGACTCTTCCCGCTCTCCTCTGAAATGGAAGTTTTCTCAAGTATTTGGTGAACGAGCTTCATCAGAGGAAGTTCAAGATGTTGATATCATTTCCGCTATTGGATTCGATAAGACTGGCGATTACCTAGCTGTTGGAGATCGGGGTGGTCGTGTTGTAATATTTGAAAGGAAGGATGGGAAAGATACTTCAAATCAGTATCATATTCAAAATAAGTTGGATCGGTTGAATCGTACCACCAAGTTTCATCCCGAATATCAGTACAAGACTGAATTTCAAAGTCACGAGCCTGAGTTTGATTACTTGAAGAGTTTGGAAATTGAAGAGAAAATTAATAAAGTAAGATGGTGTGCCACACCCAATGGAGCTCTTTTTATCCTCTCGACAAATGATAAGACAATTAAACTTTGGAAGATTAAAGAACATAAGGTGAAAAAAGTAGAAGAGGTGAACCCGATCCCCCTTGTGCGTTCAGAGAATGCACTTTTGGCTGAAAGGAGTTTCATAAGCAGAGAAGGAAAGCCTTCTCAGACAAATGGCTATTATCTGGAACAAGCTAAAAAAGATGTGATCACCAAGCCGTCGGCACAAGATCTGCAGGCTAATGTTGATGGCTTTGAGAATGGATCTTCTGCAAGATGTCGAAAGGTGTATGCTCATGCTCATGAGTTTAATATTAACTCCATTTCCAATAATAGTGATGGGGAGACATTTATTTCTGCAGACGACTTGAGGATAAACTTGTGGAATTTGGAGATTAGCCAACAGTGTTTCAATATCATAGATATGAAGCCACAGAACATGGAGGATCTTACTGAGGTCATAACATCAGCTGAATTTCATCCAATGCACTGTAATCTGCTTGCATACAGTTGCTCAAGAGGTTTCATTCGTCTGGTAGACATGCGGCAGTCAGCGTTGTGTGATCACAGTGCAGTTCTATTTCAAGACCGAGAATCTGCCAGTGTCACATCATTTTTCACAGAGATTATAGCATCCATATCTGATATAAAGTTTACAAACGATGGCCGCTACATCTTAAGTCGGGATTACATGAACCTAAAGCTATGGGATATGCGAATGGATTCTTCACCAGTCACCATATTCAAAGTTCACGAGCACTTGCTCCCTAGGTTATGCGAGCTGTATGACAATGACTCAATCTTTGACAAATTTGAGTGCTGTGTCAGCCCAAATGAGTATCATTTTGCAACGGGAACTTATAGTAATCTTTTGCGTACTTACTCCTATGGCTTTGGAAACGAGGACGGAATCATTATTGAAGCCACCAAACATCCAAATAGTTTGGATCATCTCTTTTCTAATAGGAAGCCACTTCTCCATTCCACCACAAGACCTAGAAGATCGTCCTTGAGTAACCTGACGCGTGGATTTTTCCGGCAAAATCAAAGCCATGAAAATTCAATCTCAAGTAGTACAGATTTCGGTTGTGATTTAAGCTCGAAGCTGCTACATATGGCCTGGCATCCGACAGTGAACTTAATTGCTTGTGGTGCAGGGAGTAGTTTGTTCATATATTATGCATAG 1560 40.64 MALSPDSSRSPLKWKFSQVFGERASSEEVQDVDIISAIGFDKTGDYLAVGDRGGRVVIFERKDGKDTSNQYHIQNKLDRLNRTTKFHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKVRWCATPNGALFILSTNDKTIKLWKIKEHKVKKVEEVNPIPLVRSENALLAERSFISREGKPSQTNGYYLEQAKKDVITKPSAQDLQANVDGFENGSSARCRKVYAHAHEFNINSISNNSDGETFISADDLRINLWNLEISQQCFNIIDMKPQNMEDLTEVITSAEFHPMHCNLLAYSCSRGFIRLVDMRQSALCDHSAVLFQDRESASVTSFFTEIIASISDIKFTNDGRYILSRDYMNLKLWDMRMDSSPVTIFKVHEHLLPRLCELYDNDSIFDKFECCVSPNEYHFATGTYSNLLRTYSYGFGNEDGIIIEATKHPNSLDHLFSNRKPLLHSTTRPRRSSLSNLTRGFFRQNQSHENSISSSTDFGCDLSSKLLHMAWHPTVNLIACGAGSSLFIYYA 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14610751 14616448 + Bpe021690.1 Bpe07g00846 106615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00846 519 Gene3D - 12 311 IPR015943 GO:0005515
Bpe07g00846 519 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 8 519 IPR000009 GO:0000159|GO:0019888
Bpe07g00846 519 Pfam WD domain, G-beta repeat 218 254 IPR001680 GO:0005515
Bpe07g00846 519 SUPERFAMILY WD40 repeat-like 33 509 IPR036322 GO:0005515
Bpe07g00846 519 PANTHER OS02G0617600 PROTEIN 8 519 - -
Bpe07g00846 519 SMART WD40_4 473 518 IPR001680 GO:0005515
Bpe07g00846 519 SMART WD40_4 324 362 IPR001680 GO:0005515
Bpe07g00846 519 SMART WD40_4 268 305 IPR001680 GO:0005515
Bpe07g00846 519 SMART WD40_4 102 142 IPR001680 GO:0005515
Bpe07g00846 519 SMART WD40_4 366 420 IPR001680 GO:0005515
Bpe07g00846 519 SMART WD40_4 215 254 IPR001680 GO:0005515
Bpe07g00846 519 SMART WD40_4 25 60 IPR001680 GO:0005515
Bpe07g00846 519 Gene3D - 312 518 IPR015943 GO:0005515
Bpe07g00846 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 226 253 IPR000009 GO:0000159|GO:0019888
Bpe07g00846 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 282 310 IPR000009 GO:0000159|GO:0019888
Bpe07g00846 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 488 517 IPR000009 GO:0000159|GO:0019888
Bpe07g00846 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 367 392 IPR000009 GO:0000159|GO:0019888
Bpe07g00846 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 311 338 IPR000009 GO:0000159|GO:0019888
Bpe07g00846 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 339 366 IPR000009 GO:0000159|GO:0019888
Bpe07g00846 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 393 419 IPR000009 GO:0000159|GO:0019888
Bpe07g00846 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 118 146 IPR000009 GO:0000159|GO:0019888
Bpe07g00846 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 39 59 IPR000009 GO:0000159|GO:0019888
Bpe07g00846 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 254 281 IPR000009 GO:0000159|GO:0019888
Bpe07g00846 519 PIRSF PPA2_B55 4 519 IPR000009 GO:0000159|GO:0019888
Bpe07g00846 519 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 102 116 IPR018067 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00846 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B - mnt:21386471 720.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00766 Bpe-Chr6:17975322 Bpe07g00846 Bpe-Chr7:14610751 0 dispersed
Bpe07g00846 Bpe-Chr7:14610751 Bpe10g00686 Bpe-Chr10:13353510 0 dispersed
Bpe07g00846 Bpe-Chr7:14610751 Bpe09g00014 Bpe-Chr9:116687 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g775 . . . . . . . Bma12g01043 . . . Cma11g00090 . Car11g00081 Sed08g0112 . Cpe04g01565 Bhi02g00459 Tan09g2259 Cmetu02g0570 . Hepe09g0209 . . Cla06g01669 Cam06g1857 Cec06g1905 Cco06g1911 Clacu06g1813 Cmu06g1754 Cre06g2572 . . . . . . . . . Blo15g00263 . . Bpe07g00846 . . . . . Cmo11g00089 . . . . . . . . . . . . . . . . . . . . . Csa01g00142 Chy02g02586 Cme02g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00846 Bpe_Chr07 FPKM 19.824741 23.16379 32.632317 31.345364 41.04879 44.278393 44.073376 45.291988 42.20108 41.915504