Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00850 ATGGGCGTTCGAATTGGCGGGCATGTCAAGAAGGTGAACGGGAAAGAACTAAGCTACGACGAGTTTGTGAAGAAGTACATGATGAAGAATCAGCCTGTTGTGCTGACAGGTTTAATGGATGATTGGAGGGCTTGTAGGGACTGGGTCGACGCGAATGGGCTGCCAAATCTTCAATTTCTCTCTGCCCACTTCGGTAAATCCAGGGTTCAAGTTGCAGATTGTGCCTCAAGAGAGTTCACAGATCAGAGTAGAGTAGAAATGTTTGTCTCTGATTTTATTGACCAATGGCCAAAAGACTCATCCTATAACCATGTTGCTTCTTCCACGAATGGCACTATAGGCATGTCTGTGTTGTATTTAAAGGATTGGCATTTTGTCAAGGAGTACCCGACATATGATGCATACACAACTCCTCATTTCTTTTGTGATGACTGGCTCAATCTTTATCTCGATAGTTATAGTATGCATATGGATTCAAACACTTTCCTGGAAAATGATGTCATAAGTTGCTCGGATTATCGGTTTGTCTACATGGGAGCAAAAGGTACTTGGACTCCCCTTCATGCAGATGTTTTTAGGTCATATAGTTGGTCAGCAAATGTTTGTGGGAAGAAACGATGGTGGGTCGGAGTAACTTCCTCTTCTTTCAGGAACATGAAAAACTGTGTGTATGATGTTTTTGATGATGTTAGCCAGACAAAATTTCCTGGTTTTGATAAGGCTAGCTGGCTGGAATGCATTCAAGAACAAAATGAAATTATCTTTGTCCCAAGTGGATGGTACCATCAAGTTTATAATATGGAAGCTACAGTATCAATAAACCATAACTGGTTTAATGCTTATAACCTCAGTTGGGTGCTGGATTTGCTTTTACGGGATTACAACGAAGCAAAGGAGTACATAGAGGACATTAGGGATATATGTGATGATTTCGAAGGTCTTTGCCAACGCAATCTTGCGGCTAATACAGCAGGCATGAACTTCTATGATTGCCTTATTCTCTTGGCTTGCTTTGCATTAGCCAATGTGATCCAAGTTTGTTGTCTAGGTAGAGAGTATGACAATGGTGGTAGAGAGTCATCCCCAATTGTCCAGCATTTGGCTCTGAACCTTGCATCCATACAGAATATAGCTTTGAAAATGAAATCGTTCATGGGTGATTCTGGAAATCAAGCAGTCCTTGTCAACTTAACAGAAAAGCTGACTGAGACTAAGTTCCTTAAACTTTGTGAGGGTTTGAGTGAAACTTATGGCACAATACACCATCAGAAGAATTTAAGTTTCCAAGTGAAGAAGGTTCTTACGGATGGTTCAGAGACTTTGAATATCTCCCGAATTTGTGGTGATCGAGTTTGTAATCCTGACGATCTTGCCCATTTCATCGGCAATTTATTAACAAAATTCAGGATTGAATAA 1416 40.68 MGVRIGGHVKKVNGKELSYDEFVKKYMMKNQPVVLTGLMDDWRACRDWVDANGLPNLQFLSAHFGKSRVQVADCASREFTDQSRVEMFVSDFIDQWPKDSSYNHVASSTNGTIGMSVLYLKDWHFVKEYPTYDAYTTPHFFCDDWLNLYLDSYSMHMDSNTFLENDVISCSDYRFVYMGAKGTWTPLHADVFRSYSWSANVCGKKRWWVGVTSSSFRNMKNCVYDVFDDVSQTKFPGFDKASWLECIQEQNEIIFVPSGWYHQVYNMEATVSINHNWFNAYNLSWVLDLLLRDYNEAKEYIEDIRDICDDFEGLCQRNLAANTAGMNFYDCLILLACFALANVIQVCCLGREYDNGGRESSPIVQHLALNLASIQNIALKMKSFMGDSGNQAVLVNLTEKLTETKFLKLCEGLSETYGTIHHQKNLSFQVKKVLTDGSETLNISRICGDRVCNPDDLAHFIGNLLTKFRIE 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14638125 14641420 - Bpe021694.1 Bpe07g00850 106619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00850 471 ProSiteProfiles JmjC domain profile. 126 294 IPR003347 -
Bpe07g00850 471 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 7 467 - -
Bpe07g00850 471 Pfam Cupin-like domain 21 277 IPR041667 -
Bpe07g00850 471 SMART cupin_9 118 294 IPR003347 -
Bpe07g00850 471 SUPERFAMILY Clavaminate synthase-like 9 307 - -
Bpe07g00850 471 Gene3D Cupin 3 278 - -
Bpe07g00850 471 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 7 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00850 - - - qsu:111991489 628.632
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01126 Bpe-Chr2:14887888 Bpe07g00850 Bpe-Chr7:14638125 3.80E-14 dispersed
Bpe07g00850 Bpe-Chr7:14638125 Bpe11g00908 Bpe-Chr11:6729080 2.20E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g790 . . Bda06g00609 . . . . Bma12g01045 . . Cma10g00114 . Car10g00104 . Sed08g0098 . . Bhi02g00483 Tan09g2279 Cmetu02g0880 . Hepe09g0216 . . Cla06g01677 Cam06g1865 Cec06g1914 Cco06g1919 Clacu06g1820 Cmu06g1762 Cre06g2579 . . . Cone19ag0154 . . . . . Blo15g00261 . . Bpe07g00850 . . . . Cmo10g00119 . . . . . . Cpe18g00851 . . . . . . . . . . . . . . Lsi06g01566 Csa01g00132 Chy02g02595 Cme02g01991
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009835 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21672 PF13621 Cupin_8 7.60E-18 CL0029 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00850 Bpe_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0