Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00856 ATGAACCCCTACGACAACAGATACGGAGACCCAAGCTCCTACAGAGAGCGCAGAAGTGACCTAATGGGTCCACGCCCTATGTTCGAACCGCCGATTGGTGGCGGTGGTCCGGCGAGCTATGGCCGCGGTAGTGTTCCTTTTGGAGGTCCTCGTCCTCATGCCCCTTATTCTGATGGCGGAAGAGATACTTGCAGTATTGCTGGATCAGAGCGGGGGAGTTTTGGTGACTACCCACCATTTCATCCACCCGCAGGACGTTTCAATATTGGTCGAGGTGGTGGAGGAAGAGGATCTAGTGGCACGAGAGGTGGGGGAATTGCTGGTGGACGAGTCTCTAATGCTCCTTCAGCAAATAGGTTCGGAGGTGATGGGAGAATGGGTGGTGGGCGAGGTGGTGGGAGAATGGGTGGCGGCCGAGGTGGTAGAGGGGGTGACCGGAGTTTTGATGGAGGGTTTGCCAGTAGTAAGAGTGTAGGTGGTAGAGGAAGGGAAATTGGAGGCTGGGGAGGTGGAAGAAGTGAAAGACATGGAGGCTCATATAGAGGGGACTTGGATAACATTGCACTTCCAAAGCAAGATTTTGGAAATTTGGTCCCTTTTGAGAAGAGTTTTTATATGGAGAGTCCTTCGGTGCAGTCAATGACTGAGCACGAAGTTATACTCTACAGAAAGCAGCGAGAGATCACTGTAGAAGGACATGATATTCCAAAACCAATTCGACTGTTTCAAGAGGCCAACTTCCCTCAATATTGCCTCGACGTGATTGCTAAACTGGGTTTTGTGGAGCCTACTCCAATTCAGGCTCAAGGATGGCCAATGGCACTGAAAGGTAGAGACTTGATTGGCATTGCCGAAACGGGATCTGGTAAGACTTTGGCTTATCTACTTCCAGCACTTGTACACGTGAGTGCTCAGCCTCGATTAGTCCAAGGTGAAGGTCCCATTGTATTAGTGTTAGCTCCTACCCGGGAGTTAGCAGTTCAAATTCAAGAAGAAGCTGTGAAATTTGGGCTGCGAGCAAATGTCAGAAGTACTTGTATATATGGTGGTGCTCCAAAAGGGCCTCAAATTCGAGATCTTAAAAGAGGTGTAGAGATAGTGATTGCAACTCCTGGTCGTCTTATTGATATGCTCGAAGCTCAACATACAAACTTAAGGAGAGTGACTTACCTTGTTTTGGATGAGGCTGATCGAATGTTGGATATGGGATTTGAGCCTCAAATAAGGAAAATTGTCAGCCAAATTCGACCAGATAGACAGACGTTGTATTGGAGTGCAACATGGCCAAGGGAGGTTGAGAAATTGGCAAGGCAATTTTTGCGTAACCCTTACAAGGTCATTATTGGATCACCGGATCTGAAAGCTAATCAATCAATTAACCAAGTTGTTGAAGTTATGACGGACATGGAGAAATACAACAGACTGATTAAACTGCTCAAAGAAGGGATGAATGGCAGCCGCATTCTGATATTTGTGGAAACGAAAAAAGGTTGTGACCAAGTTACAAGGCAGTTGAGAATGGATGGATGGCCTGCCCTTTCCATTCATGGTGATAAAAATCAGACTGAAAGAGACTGGGTCCTGTCCGAGTTTAAAAGTGGACGTAGTCCAATTATGACAGCCACCGACGTGGCAGCACGGGGTCTTGATGTGAAGGATATAAAATGTGTGGTCAACTATGACTTTCCTGTTAGCCTAGAGGATTATGTTCATCGGATTGGCCGGACCGGCCGTGCAGGGGCAAAAGGAACCGCCTTCACCTTCTTTACGCAGGCGAACGCAAAATTTGCTCGGGATCTTGCCAAGATCTTGCAAGAAGCAGGGCAGTATGTGCCCCCGCCATTGTATGCAATGGCCCAATCTAGTCGCTCTGGTTTTGGAGGATCGGGAGGAGGAAACTTCGGTTCGAGAGGGCGCAGAGGAGGAGGTGACCACGGTCGGCGTGGTCAAATATCAGGATCAAACACTGTTCCTCTTGGATCAAAGAGGCCTTGGTAG 1998 48.35 MNPYDNRYGDPSSYRERRSDLMGPRPMFEPPIGGGGPASYGRGSVPFGGPRPHAPYSDGGRDTCSIAGSERGSFGDYPPFHPPAGRFNIGRGGGGRGSSGTRGGGIAGGRVSNAPSANRFGGDGRMGGGRGGGRMGGGRGGRGGDRSFDGGFASSKSVGGRGREIGGWGGGRSERHGGSYRGDLDNIALPKQDFGNLVPFEKSFYMESPSVQSMTEHEVILYRKQREITVEGHDIPKPIRLFQEANFPQYCLDVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAVKFGLRANVRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVEKLARQFLRNPYKVIIGSPDLKANQSINQVVEVMTDMEKYNRLIKLLKEGMNGSRILIFVETKKGCDQVTRQLRMDGWPALSIHGDKNQTERDWVLSEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPVSLEDYVHRIGRTGRAGAKGTAFTFFTQANAKFARDLAKILQEAGQYVPPPLYAMAQSSRSGFGGSGGGNFGSRGRRGGGDHGRRGQISGSNTVPLGSKRPW 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14710133 14715285 - Bpe021699.1 Bpe07g00856 106625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00856 665 Pfam DEAD/DEAH box helicase 264 435 IPR011545 GO:0003676|GO:0005524
Bpe07g00856 665 MobiDBLite consensus disorder prediction 621 665 - -
Bpe07g00856 665 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 195 649 - -
Bpe07g00856 665 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 240 268 IPR014014 GO:0003724
Bpe07g00856 665 PANTHER LD32873P 195 649 - -
Bpe07g00856 665 MobiDBLite consensus disorder prediction 89 177 - -
Bpe07g00856 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 596 IPR027417 -
Bpe07g00856 665 SMART helicmild6 499 580 IPR001650 -
Bpe07g00856 665 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 271 446 IPR014001 -
Bpe07g00856 665 Gene3D - 452 617 IPR027417 -
Bpe07g00856 665 SMART ultradead3 259 462 IPR014001 -
Bpe07g00856 665 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 392 400 IPR000629 -
Bpe07g00856 665 CDD SF2_C_DEAD 459 589 - -
Bpe07g00856 665 Pfam Helicase conserved C-terminal domain 470 580 IPR001650 -
Bpe07g00856 665 Gene3D - 203 450 IPR027417 -
Bpe07g00856 665 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 474 619 IPR001650 -
Bpe07g00856 665 MobiDBLite consensus disorder prediction 1 71 - -
Bpe07g00856 665 CDD DEADc_DDX5_DDX17 252 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00856 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - qsu:112035669 889.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00856 Bpe-Chr7:14710133 Bpe14g01079 Bpe-Chr14:8087953 7.83E-155 dispersed
Bpe10g00600 Bpe-Chr10:12901260 Bpe07g00856 Bpe-Chr7:14710133 8.08E-98 dispersed
Bpe03g00491 Bpe-Chr3:24649153 Bpe07g00856 Bpe-Chr7:14710133 7.64E-136 transposed
Bpe03g00649 Bpe-Chr3:26707398 Bpe07g00856 Bpe-Chr7:14710133 0 transposed
Bpe04g00293 Bpe-Chr4:1874421 Bpe07g00856 Bpe-Chr7:14710133 1.77E-137 transposed
Bpe06g00338 Bpe-Chr6:14800020 Bpe07g00856 Bpe-Chr7:14710133 1.75E-34 transposed
Bpe07g00023 Bpe-Chr7:156904 Bpe07g00856 Bpe-Chr7:14710133 2.52E-10 transposed
Bpe08g00840 Bpe-Chr8:10581426 Bpe07g00856 Bpe-Chr7:14710133 8.90E-13 transposed
Bpe09g00180 Bpe-Chr9:1247563 Bpe07g00856 Bpe-Chr7:14710133 8.54E-51 transposed
Bpe10g00779 Bpe-Chr10:13968001 Bpe07g00856 Bpe-Chr7:14710133 1.22E-11 transposed
Bpe11g00308 Bpe-Chr11:2242752 Bpe07g00856 Bpe-Chr7:14710133 7.28E-128 transposed
Bpe14g01313 Bpe-Chr14:10132274 Bpe07g00856 Bpe-Chr7:14710133 1.09E-33 transposed
Bpe02g01498 Bpe-Chr2:18235206 Bpe07g00856 Bpe-Chr7:14710133 1.04E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g811 . . . . . . . . . . Cma10g00099 . Car10g00086 . . . . Bhi02g00510 . . . . . . Cla06g01693 Cam06g1881 Cec06g1928 Cco06g1933 Clacu06g1837 Cmu06g1779 Cre06g2594 Cone2ag0927 . . . . . . . . . . . Bpe07g00856 . . . . Cmo10g00101 . . . . . . Cpe18g00865 . . . . . . . . . . . . . . Lsi06g01588 . Chy02g02611 Cme02g02008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011968 0 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00856 Bpe_Chr07 FPKM 0.0 0.0 1.283183 1.895229 0.92558 1.007599 0.757725 0.273944 0.851255 0.0