Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00867 CGGTGGAGATCAACCATCATGCCTCAATCGCAGGAGGAGATTGGAGAGGCGGCGATAAAGCACGCTCTCAAGGCTTTGCGTAAGCGCCACTTCCTCGAAGAAGGCGCTCATGCTCCTGCTTTTCTCGCCCTCTCCAGGCCTATTGCTTTGCTGGGCTTGGAATGGAAGGAGAAAGTGGAGAATTTGGAGATGGAACTGCAACAGTGTAACAAAGCACAATCTCGATTGTCTGAGCAGCTTGTTGTGGAAGTAGCCGAATCCAGAGCTTCTAGAGCTTTAATTACAGAAAAAAATGGAATGATCGATAAACTTGAGAAAGATTTGACATTAGCAAGGTTTGTCTTATCATTTCCTATTTATTTTTACAGGGAAGAATGTTCCGAGTTAAAGACTGACTTAGAAGAGAAATTTAAAGCCTTGGAATTGATTTTGGCTGAGAACAAGGAAATAAAGGCGGAACTAGAAGCAATGATTGTGAAGGCTAGAAATGCAGAGGCAGAAAATAAAATGTTGGTTGATCGATGGATGTTGCAAAAGATGCAAGACGCTGAACGTCTTAATGAGGCAAATGCACTTTATGAAGATATGATCGAGCGACTCAAGGCCAGTGGCTTGGAGAAACTTGCTCGACAACAGGTAGATGGTGTAGTTCGTCAAAGTGAAGAGGGTGCCGAATACTTCGAGTCAGTTATTCCATCCACATGCAAGTACCGAACACATGCTCATGAAGGAGGGTGTGGTTCCATTTTGTTTGAATACAATTCTGGAAAATTGATCAGCGGAGGACAAGACCGTTTAATTAAAGTCTGGGACACAAACACTGGATCCTTGAGTAGTACCCTTTATGGTTGCCTTGGTTCTGTACTTGATCTTGCCATTACCCATGACAATAAATCTCTAATTGCAGCTAGCAGCTCAAACAACCTGTACGCATGGGATATCTCCTCTGGACGGGTTCGTCATACTCTAACTGGCCACACTGATAAAGTCTGTACTGTGGCCGTGAGCAAGTTCTCCAATCGTCACGTTGTGAGTGCTGCTTATGATCGAACCATTAAAATTTGGGATTTACAGAAAGGTTACTGCACCAAAACAATCATTTTCCACAGCAACTGCAATGCAATATGCTTCAGTGTAGATGGGTTAAGTATCTTCTCCGGCCACGTCGATGGAAACCTCCGGTTATGGGATATTCAGACTGGAAAAATGCTCGGAGAAGTCGCTGCTCATTCACTGGCTGTAACTTCTATCTCTCTGTCTAGAAACGGCAATGTAATACTGACAAGTGGGAGAGATAACTTGCACAATTTGTTTGATATGCGATCTCTTGAAGTTTGCGGCACTTTAAGGGCGAGTGGAAACAAAGTAGCCTCTAATTGGAGTAGATCATGTATGAGTCCAGATGACAACCATGTGGCTGCCGGGTCTGCTGATGGATCTGTTCATATCTGGTCGATATCCAGAGCCAACATAGTAAGTACACTGAAAGAACATGCCTCATCGGTTTTATGTTGTTCATGGAGTGGTCTCGGGAAACCTCTAGCGTCAGCCGATAAAAATGGGGTAATATGCACTTGGACTTGA 1584 43.94 RWRSTIMPQSQEEIGEAAIKHALKALRKRHFLEEGAHAPAFLALSRPIALLGLEWKEKVENLEMELQQCNKAQSRLSEQLVVEVAESRASRALITEKNGMIDKLEKDLTLARFVLSFPIYFYREECSELKTDLEEKFKALELILAENKEIKAELEAMIVKARNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIERLKASGLEKLARQQVDGVVRQSEEGAEYFESVIPSTCKYRTHAHEGGCGSILFEYNSGKLISGGQDRLIKVWDTNTGSLSSTLYGCLGSVLDLAITHDNKSLIAASSSNNLYAWDISSGRVRHTLTGHTDKVCTVAVSKFSNRHVVSAAYDRTIKIWDLQKGYCTKTIIFHSNCNAICFSVDGLSIFSGHVDGNLRLWDIQTGKMLGEVAAHSLAVTSISLSRNGNVILTSGRDNLHNLFDMRSLEVCGTLRASGNKVASNWSRSCMSPDDNHVAAGSADGSVHIWSISRANIVSTLKEHASSVLCCSWSGLGKPLASADKNGVICTWT 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14774461 14776732 + Bpe021710.1 Bpe07g00867 106636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00867 527 CDD WD40 242 526 - -
Bpe07g00867 527 Coils Coil 52 79 - -
Bpe07g00867 527 PRINTS G protein beta WD-40 repeat signature 343 357 IPR020472 -
Bpe07g00867 527 PRINTS G protein beta WD-40 repeat signature 384 398 IPR020472 -
Bpe07g00867 527 PRINTS G protein beta WD-40 repeat signature 258 272 IPR020472 -
Bpe07g00867 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 495 527 IPR001680 GO:0005515
Bpe07g00867 527 Coils Coil 183 203 - -
Bpe07g00867 527 ProSitePatterns Trp-Asp (WD) repeats signature. 258 272 IPR019775 -
Bpe07g00867 527 Gene3D - 371 527 IPR015943 GO:0005515
Bpe07g00867 527 ProSitePatterns Trp-Asp (WD) repeats signature. 384 398 IPR019775 -
Bpe07g00867 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 322 IPR001680 GO:0005515
Bpe07g00867 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 466 494 IPR001680 GO:0005515
Bpe07g00867 527 SMART WD40_4 232 271 IPR001680 GO:0005515
Bpe07g00867 527 SMART WD40_4 359 397 IPR001680 GO:0005515
Bpe07g00867 527 SMART WD40_4 274 313 IPR001680 GO:0005515
Bpe07g00867 527 SMART WD40_4 488 527 IPR001680 GO:0005515
Bpe07g00867 527 SMART WD40_4 316 356 IPR001680 GO:0005515
Bpe07g00867 527 SMART WD40_4 442 485 IPR001680 GO:0005515
Bpe07g00867 527 SMART WD40_4 400 439 IPR001680 GO:0005515
Bpe07g00867 527 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 360 - -
Bpe07g00867 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 407 442 IPR001680 GO:0005515
Bpe07g00867 527 Coils Coil 140 174 - -
Bpe07g00867 527 PANTHER AUTOPHAGY PROTEIN 16-LIKE 11 527 IPR045160 GO:0000045
Bpe07g00867 527 SUPERFAMILY WD40 repeat-like 230 526 IPR036322 GO:0005515
Bpe07g00867 527 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 495 527 - -
Bpe07g00867 527 Gene3D - 128 370 IPR015943 GO:0005515
Bpe07g00867 527 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 239 276 - -
Bpe07g00867 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 374 406 IPR001680 GO:0005515
Bpe07g00867 527 Pfam WD domain, G-beta repeat 361 397 IPR001680 GO:0005515
Bpe07g00867 527 Pfam WD domain, G-beta repeat 240 271 IPR001680 GO:0005515
Bpe07g00867 527 Pfam WD domain, G-beta repeat 464 485 IPR001680 GO:0005515
Bpe07g00867 527 Pfam WD domain, G-beta repeat 319 356 IPR001680 GO:0005515
Bpe07g00867 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 280 IPR001680 GO:0005515
Bpe07g00867 527 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 11 527 - -
Bpe07g00867 527 ProSitePatterns Trp-Asp (WD) repeats signature. 343 357 IPR019775 -
Bpe07g00867 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 365 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00867 K17890 ATG16L1; autophagy-related protein 16-1 - tcc:18605006 830.476
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00867 Bpe-Chr7:14774461 Bpe11g01842 Bpe-Chr11:14825652 3.87E-07 dispersed
Bpe02g01504 Bpe-Chr2:18277899 Bpe07g00867 Bpe-Chr7:14774461 2.44E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g873 . . Bda06g00626 . . . . Bma12g01063 . . . . . . Sed08g0061 . Cpe04g01594 Bhi02g00574 Tan09g2330 Cmetu06g0240 . Hepe09g0081 . . Cla06g01715 Cam06g1904 Cec06g1954 Cco06g1958 Clacu06g1860 Cmu06g1802 Cre06g2617 Cone2ag0942 Cone16ag0059 . . . . . . . Blo15g00241 . . Bpe07g00867 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01609 Csa01g00087 Chy02g02633 Cme02g02032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00867 Bpe_Chr07 FPKM 263.451843 287.607086 58.195137 55.530834 53.612762 61.730305 53.183735 54.994572 57.431866 57.648281