Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00870 ATGGCGTCAACCGTTCTCAATCTTCCATCCACCGCAACTTCTTCTCTGTTAACTAGTTTTCATAATCACCCCAAAACCTCCATTTCTTCTTCCAACCTTCCGGAGAGAGCTTTTTCTTCATCGTTTTATGGTGCAACTGTAAGTCTATGTCATAAAACGAATCGAGTCTCCGGAGTGGGGACGAAGAAAGCTTCTCGAGAAGTTATCTGCGGTGCTACTGCCTCTTCGCTTCCATCTGCTCTTCTTTTTGACTGTGATGGCGTGCTTGTTGATACCGAAAAGGATGGGCACCGGATTTCCTTTAATGAAACTTTCAATGAGAGAGAGTTGGGTGTTACTTGGGATGTGGATCTATATGGTGAGTTGCTCAAGATCGGGGGTGGAAAAGAAAGGATGACTGCCTATTTTAACAAGACGGGCTGGCCAGAAAAAGCTCCAAAGGAGGAAGATGAACGAAAGAAATTCATAGCTTCTCTTCACAAGCAAAAGACAGAGATTTTCATGGTTCTAATCGAGAAAAAATTGCTGCCTCTTCGGCCGGGTGTTGCAAAGCTGATAGATCAAGCTTTGGCAAAAGGAGTTAAAGTTGCTGTATGCAGCACTTCTAATGAGAAGGCGGTATCCGCAATAGTTTCATGTTTGTTAGGACCGGAACGTGCTGAAAAGATATTAATCTTTGCAGGAGATGTGGTTCCTCGCAAAAAGCCTGATCCTGCAATCTACTTGTTAGCAGCCAGCACCCTGGGTGTGGATCCTTCAAGTTGTGTCGTTGTGGAAGATAGTGCCATTGGCCTTTCTGCTGCAAAAGCTGCCGGAATGAAGTGTGTAGTAACGAAGAGCGGGTACACTGCCGATGAAGACTTTATAAACGCAGATGCCGTCTTCGACTGCATCGGAGATCCTCCGGAGGAGCGATTTGATTTGGAATTCTGTGCAAATCTTCTTGCGAAGCAATTTGCTTAG 963 45.17 MASTVLNLPSTATSSLLTSFHNHPKTSISSSNLPERAFSSSFYGATVSLCHKTNRVSGVGTKKASREVICGATASSLPSALLFDCDGVLVDTEKDGHRISFNETFNERELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPKEEDERKKFIASLHKQKTEIFMVLIEKKLLPLRPGVAKLIDQALAKGVKVAVCSTSNEKAVSAIVSCLLGPERAEKILIFAGDVVPRKKPDPAIYLLAASTLGVDPSSCVVVEDSAIGLSAAKAAGMKCVVTKSGYTADEDFINADAVFDCIGDPPEERFDLEFCANLLAKQFA 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14785386 14788644 - Bpe021713.1 Bpe07g00870 106639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00870 320 CDD HAD_CbbY-like 80 280 - -
Bpe07g00870 320 Gene3D Putative phosphatase; domain 2 92 176 IPR023198 -
Bpe07g00870 320 PANTHER XYLULOSE-1,5-BISPHOSPHATE (XUBP) PHOSPHATASE 61 318 IPR044999 GO:0016787
Bpe07g00870 320 SUPERFAMILY HAD-like 78 300 IPR036412 -
Bpe07g00870 320 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 76 304 - -
Bpe07g00870 320 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 160 277 IPR006439 -
Bpe07g00870 320 Gene3D - 80 297 IPR023214 -
Bpe07g00870 320 PANTHER CBBY-LIKE PROTEIN 61 318 - -
Bpe07g00870 320 Pfam Haloacid dehalogenase-like hydrolase 81 277 IPR041492 -
Bpe07g00870 320 SFLD phosphoglycolate phosphatase 76 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00870 - - - jre:108984970 481.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00870 Bpe-Chr7:14785386 Bpe11g01047 Bpe-Chr11:7808376 5.06E-18 dispersed
Bpe02g01841 Bpe-Chr2:20540183 Bpe07g00870 Bpe-Chr7:14785386 4.14E-12 transposed
Bpe06g00081 Bpe-Chr6:1123598 Bpe07g00870 Bpe-Chr7:14785386 1.00E-49 transposed
Bpe07g00109 Bpe-Chr7:780358 Bpe07g00870 Bpe-Chr7:14785386 5.26E-08 transposed
Bpe07g00230 Bpe-Chr7:1634038 Bpe07g00870 Bpe-Chr7:14785386 3.03E-07 transposed
Bpe15g00192 Bpe-Chr15:12951373 Bpe07g00870 Bpe-Chr7:14785386 5.09E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g885 . . Bda06g00630 . . . . Bma12g01067 . . . Cma11g00055 . Car11g00049 Sed08g0057 . Cpe04g01597 Bhi02g00571 Tan09g2336 Cmetu02g1589 . Hepe09g0075 . . Cla06g01719 Cam06g1909 Cec06g1959 Cco06g1963 Clacu06g1865 Cmu06g1807 Cre06g2622 . . Cone13ag0201 Cone19ag0189 . . . . . Blo15g00238 . . Bpe07g00870 . . . . . Cmo11g00057 . . . . . . . . . . . . . . . . . . . . Lsi06g01613 Csa01g00083 Chy02g02637 Cme02g02036
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009837 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00870 Bpe_Chr07 FPKM 32.344666 31.746185 31.753639 33.190998 43.118683 43.149082 40.080372 53.180954 51.059856 48.755642