Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00884 ATGATGGAAAAGCCAGGTAGTTCATTTCCTTCGTGGAGTCGCTTAGCTCGTATGCCATACTCAAATTTTAAGACGTTCACGCCTTGGTGTAGGCTACTCTCACAATTTGGTCAGAACCCGAATATTCTCATTTCCCATGTGAATTTCACAATTGGATCATGCAGATTTAGTAATTTTCCATTAAAAGATCAGACTATTAGTGACACTCTATGCAAAATAAAGCAAACGCAGCAGAAGGAGGGAACCACTATGGCCGTGCTAGAGACTATAGGGAGCAAAGGATCAGTGATTGTAAATGGGTTAATTGTGAAAAATAATTCACAATGTATGCTTAACTCGGGTGACGAGGTAGTCTTTAGTGCATTGGGGAACCATGCCTATATTTTCCAGCAACTTACAACTGAATCTCAAAGGACAACTGAATCTCAACTTGCAGCTGATTCTGTATCGGCATCTTTGTCAAGCCCTAGGACCGAAAGTAAAATCCATCAGGGGACTGATTTGCCTTCTCATTCTGCTGCTCGTGATGTTCTTGAAGCCATCTCAACTCCAGATTTAGGAGGCCATAAAGCTGCACATGTGGAAACAATCGACAAGAATCGTTCTCCTGACAGAAAAATGGACTCTGGTGTAGAGGCATGCAATGTAAAACATTCTGAGGAATTTCTTCAGGATGTAGCTCCATCAACTAATTGTAAACTGAAATTAAGCATCTGTAAACAGTTAATGGAAGAAAGAAACCAGTGGACTGGACATTTGCAGCGAACATCAACTCCTGACATACCTTTGTTGCGTCAAGTGATTTTAGAAGACATTCTTGCTGGGATAGTTGATGGCACAGACTTGGGAGTTTCTTTTGAAAAGTTCCCTTATTATTTGAGTGAGAATACAAAAAGAGTGTTGATTGCAACTTCTGTCATACACTTGAAGCATAAAGAACATGCAAAATATACCTCAGAACTACCTACAGTAAATCCACGAATTTTACTTTCTGGTCCTGAAGGATCAGAACTATATCAAGAGATTTTGGCGGAGGCACTAGCTAAGTACTTTGGTGCTAAATTGCTCATATTTGATACCTATTCCATCTTAAGAGGTTTGTGTTCAAAGGAAGCAGAGATGGTAAATGATGGAGTTACTGCAGAAAAACTCTGTCCTAGGTGTGCAAATGGTCCCTTTGAAAGACTGATTTCACGATCAAAGATGGAGACCAATACTATGTCTTCTTCCTCAGGCACATCAGAAAATTACTTGTTCAAGATCGGTGACAGAGTTAGATTTATGGGTTCAATAGATGTCCGTTTATATCCAACAACATCTTCTTTTAGGTCCTGTCATGCCATGCCAAAAGTAATGAATTCTTTATGTTGTAGAGTCCCGCCAATTGCTTCTCGAGGAAAGGTTTTGTTAACTTTTGAAGGCAACTCTTTTTCAAAGATCGGTGTAAAGTTTGATATACCCGTACCAGATGGGGTGGATCTTGGGGGTCTTTGCGAAGGAGGTTATGGATTCTTTTGCTGTGCTTCTGATCTTTGTTTGGAGAACTCTGGTGCAGATAACAATTTACTAATTGATATACTGTTCGCGGTAGTGAACTGTGTGAGCAGAAGTTCTCCATTTATTTTGTTTGTTAAAGACACTGAGAGATCTCTTTTAAAGAATTTTCATTTATACTCTGATTTCGAGAGTAAACTAGAGAAGCTTCCAGATAATGTCATAGTAATAGGTTCTCACACTCATACTCATAAAGACTCTTGCCAGGAGAAGTTGTATCCTGATGGTCAGGTTTTGACAAAATTTGGCGCCAACCAAACTGGTCATCTTGATTTCTCTTTCCTGGTTAATTTAAGAGATATTGGTCCTGATACGGGGAAGAAAGTTCAATCCCAAATGAATGTGCTTGCAAAACTTTTCCCGAATAAAGTAACAATTCACATGCCACAGGACGAGGCACTTCTTGTATCTTGGAAGCACCAACTTGATCTTGACATAGAAATCATGAAAATGAAAGAAAACCTGAATCACTTGAGAGCTGTCTTGGGTCAGTGTGGAATGGATTGTGAAGGTCTAGGTTCTCTATGCATAGAGGATCAAACGCTAACTGATGAGCGTGCAAAGAAGGTAGTGGGGTGGGCACTAAGCCATCATTTAATGCACAATGCTCCAGCTGATATTGATGATCCACTTATCTTGTCTAGTGAGAATATCGAGTATGCGGTTGGATTATTATATGCTATCCAGAATGAATCTAAAAGCATAAAGAAGTCTCTAAAGGATGTTGCCTCTGAAAACGAATTTGAGAAAAGACTCTTAGCTGATGTTGTTCCACCTAATGACATTGGAGTTACATTTGATGATATTGGAGCCATGGAAAATGTTAAGGATACTTTGAAGGAATTAGTGATGCTCCCATTGCAAAGGCCAGAACTATTCTGCAAGGGGAAACTAACAAAGCCATGCAAAGGCATACTACTATTTGGTCCGCCTGGTACTGGTAAGACAATGCTTGCAAAAGCTGTTGCCACTGAAGCTGGTGCAAATTTCATCAGCGTTTCTATGTCTAGCATCACTTCCAAGTGGTTTGGTGAAAGCGAAAAGTATGTGAAGGCCGTCTTCTCATTGGCTAATAAAATTGCTCCAAGTGTCATATTTGTTGATGAAGTTGACAGCATGCTGGGGCAGAGGGAAAGTCATGGTGAGAACGAAAGCACGAGAAAGATGAAAAATGAATTTATGGTGAATTGGGATGGATTACGAACCAAAGATACAGAACGAGTACTTGTTCTTGCAGCTACAAACAGACCTTTTGACTTAGACGAGGCTGTCATTCGGAGACTGCCACGAAGACTAATGGTAAATTTGCCAGACACCCCAAATAGATCAAAAATTTTGAAAGTTATCCTGGAGAAGGAGGATTTATCCCCGGACTTCGATTTTGATGCGATTGCAAACATGACAAAGGGGTATTCCGGCAGTGATCTTAAGAATTTATGTGTAGCTGCTGCTCACCGGCCAATTAAAGAGATATTGGAAAAAGAAAAGAAGGGTCTAAAGGAACTTGATGGTTTGGAAGAGAAGGCTAGAGCGAGTGGGGCATGTCAGTTGGTAGTGAAGGACTTAAAGGAGGAATTTGTGAGAGACTACATATTTCCTTGCTTACGAGCTGGTGCGATATATGAAAGGAAATACTTGTTGGGGACCTCCATGGCTCGCCCAGTAATTGCAAAGGCCATGGTCGATGTTGCAAAAGAAGTTGGAGCGGATGCTGTCTCTCATGGATGCACTGGGAAAGGAAATGATCAGAAGTCTTGTCTTTACTTTATTCTTTTAACATTTCTGAAAAAAAAAAACATCATTCCTGCTTTTATTCAGGTTCGATTTGAGCTCACATTCTTTGCTCTAAATCCCAAATTAAATGTCGTTGCTCCTTGGAGGGAATGGGATATCACAGGGAGAGAAGATGCCATTGAGTATGCTAAGAAGCACAATGTACCTGTTCCAGTGACGAAGAAATCAATATATAGCAGGGATCGAAATTTATGGCACCTTAGTCACGAGGGTGACCTTCTGGAAGATCCTGCAAATGAGCCTAAAAAGGATATGTACATGATGTCTGTGGAGCCTGAAGATGCACCAAACAAACCAGAATATATAGAAATTGGTATAGTTTCAGGTCTACCTGTCTCTGTCAATGGGAAGAAACTTTCTCCAGCATCCCTCCTTGCTGAGCTCAACGACATTGGTGGGAAGCATGGAATTGGACGAGTTGACATGGTTGAAAATCGGCTTGTGGGCATGAAAAGCCGTGGAGTGTATGAAACTCCAGGGGGGACGATTCTTTTCTCGGCAGTGCGGGAGCTGGAGTCATTAACTCTAGATCGAGAGACTCTACAAGTTAAAGATTCACTTGCCCTCAAATATGCTGAGCTGGTTTATGCAGGAAGATGGTTTGATCCACTTCGTGAGTCTATGGATGCATTCATGGAGAAGATCACAGAGACTACTACAGGATCAGTGACCCTCAAATTATATAAAGGCTCTGTTACTGTAACAGGCCGGAAAAGTGAATACAGCCTTTACAGGCAGGACATTTCTTCATTCGAAAGCGGGCAGATTTACGATCAGGCTGATGCAGCTGGTTTTATTCGTCTTTATGGACTTCCAACAAGGGTACGAGCAATGCTCGAGCAAGGTATTTGA 4200 41.07 MMEKPGSSFPSWSRLARMPYSNFKTFTPWCRLLSQFGQNPNILISHVNFTIGSCRFSNFPLKDQTISDTLCKIKQTQQKEGTTMAVLETIGSKGSVIVNGLIVKNNSQCMLNSGDEVVFSALGNHAYIFQQLTTESQRTTESQLAADSVSASLSSPRTESKIHQGTDLPSHSAARDVLEAISTPDLGGHKAAHVETIDKNRSPDRKMDSGVEACNVKHSEEFLQDVAPSTNCKLKLSICKQLMEERNQWTGHLQRTSTPDIPLLRQVILEDILAGIVDGTDLGVSFEKFPYYLSENTKRVLIATSVIHLKHKEHAKYTSELPTVNPRILLSGPEGSELYQEILAEALAKYFGAKLLIFDTYSILRGLCSKEAEMVNDGVTAEKLCPRCANGPFERLISRSKMETNTMSSSSGTSENYLFKIGDRVRFMGSIDVRLYPTTSSFRSCHAMPKVMNSLCCRVPPIASRGKVLLTFEGNSFSKIGVKFDIPVPDGVDLGGLCEGGYGFFCCASDLCLENSGADNNLLIDILFAVVNCVSRSSPFILFVKDTERSLLKNFHLYSDFESKLEKLPDNVIVIGSHTHTHKDSCQEKLYPDGQVLTKFGANQTGHLDFSFLVNLRDIGPDTGKKVQSQMNVLAKLFPNKVTIHMPQDEALLVSWKHQLDLDIEIMKMKENLNHLRAVLGQCGMDCEGLGSLCIEDQTLTDERAKKVVGWALSHHLMHNAPADIDDPLILSSENIEYAVGLLYAIQNESKSIKKSLKDVASENEFEKRLLADVVPPNDIGVTFDDIGAMENVKDTLKELVMLPLQRPELFCKGKLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFISVSMSSITSKWFGESEKYVKAVFSLANKIAPSVIFVDEVDSMLGQRESHGENESTRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTPNRSKILKVILEKEDLSPDFDFDAIANMTKGYSGSDLKNLCVAAAHRPIKEILEKEKKGLKELDGLEEKARASGACQLVVKDLKEEFVRDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVSHGCTGKGNDQKSCLYFILLTFLKKKNIIPAFIQVRFELTFFALNPKLNVVAPWREWDITGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDLLEDPANEPKKDMYMMSVEPEDAPNKPEYIEIGIVSGLPVSVNGKKLSPASLLAELNDIGGKHGIGRVDMVENRLVGMKSRGVYETPGGTILFSAVRELESLTLDRETLQVKDSLALKYAELVYAGRWFDPLRESMDAFMEKITETTTGSVTLKLYKGSVTVTGRKSEYSLYRQDISSFESGQIYDQADAAGFIRLYGLPTRVRAMLEQGI 1399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14929705 14947281 - Bpe021727.2 Bpe07g00884 106653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00884 1399 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN-RELATED 21 1016 - -
Bpe07g00884 1399 Coils Coil 1006 1026 - -
Bpe07g00884 1399 CDD Argininosuccinate_Synthase 1018 1388 IPR023434 GO:0004055
Bpe07g00884 1399 Pfam AAA+ lid domain 976 1011 IPR041569 -
Bpe07g00884 1399 Pfam ATPase family associated with various cellular activities (AAA) 823 952 IPR003959 GO:0005524|GO:0016887
Bpe07g00884 1399 Gene3D Argininosuccinate synthetase, chain A, domain 2 1174 1398 IPR024074 GO:0004055
Bpe07g00884 1399 SUPERFAMILY Argininosuccinate synthetase, C-terminal domain 1171 1397 IPR024074 GO:0004055
Bpe07g00884 1399 Gene3D - 781 954 IPR027417 -
Bpe07g00884 1399 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1018 1204 - -
Bpe07g00884 1399 ProSitePatterns AAA-protein family signature. 926 945 IPR003960 GO:0005524|GO:0016887
Bpe07g00884 1399 SUPERFAMILY SMAD/FHA domain 28 126 IPR008984 GO:0005515
Bpe07g00884 1399 CDD AAA 788 954 - -
Bpe07g00884 1399 Hamap Argininosuccinate synthase [argG]. 982 1397 IPR023434 GO:0004055
Bpe07g00884 1399 SMART AAA_5 819 956 IPR003593 -
Bpe07g00884 1399 Gene3D HUPs 1062 1172 IPR014729 -
Bpe07g00884 1399 MobiDBLite consensus disorder prediction 140 169 - -
Bpe07g00884 1399 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 21 1016 - -
Bpe07g00884 1399 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 827 846 - -
Bpe07g00884 1399 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 1207 1226 - -
Bpe07g00884 1399 MobiDBLite consensus disorder prediction 140 167 - -
Bpe07g00884 1399 Gene3D - 955 1021 - -
Bpe07g00884 1399 Pfam Arginosuccinate synthase 1124 1391 IPR001518 GO:0004055|GO:0005524|GO:0006526
Bpe07g00884 1399 Pfam Arginosuccinate synthase 1018 1101 IPR001518 GO:0004055|GO:0005524|GO:0006526
Bpe07g00884 1399 TIGRFAM argG: argininosuccinate synthase 1124 1392 IPR001518 GO:0004055|GO:0005524|GO:0006526
Bpe07g00884 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 782 1012 IPR027417 -
Bpe07g00884 1399 Gene3D - 28 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00884 - - - csv:101214766 1258.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00884 Bpe12g00487 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00884 Bpe-Chr7:14929705 Bpe07g00999 Bpe-Chr7:15672117 9.23E-144 dispersed
Bpe03g00410 Bpe-Chr3:20937469 Bpe07g00884 Bpe-Chr7:14929705 8.30E-16 transposed
Bpe06g00609 Bpe-Chr6:16899381 Bpe07g00884 Bpe-Chr7:14929705 8.29E-13 transposed
Bpe07g01027 Bpe-Chr7:15826275 Bpe07g00884 Bpe-Chr7:14929705 7.19E-88 transposed
Bpe10g00458 Bpe-Chr10:11912883 Bpe07g00884 Bpe-Chr7:14929705 0 transposed
Bpe12g00492 Bpe-Chr12:10727164 Bpe07g00884 Bpe-Chr7:14929705 3.74E-57 transposed
Bpe12g00487 Bpe-Chr12:10672388 Bpe07g00884 Bpe-Chr7:14929705 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g126 . . Bda06g00733 . Bpe12g00487 . . . Cmo13g00832 . . . . . . Cpe20g00310 . . . . . . . . . . . . . . . Cone2ag0968 . . Cone19ag0203 Lsi02g00499 Csa01g00959 . . . Blo15g00077 . . Bpe07g00884 . . . . . . Cma13g00801 . Car13g00649 Car18g00225 . . Bhi08g01473 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002923 2 8 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 4 2 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00884 Bpe_Chr07 FPKM 2.89194 3.956764 3.403713 3.459934 3.571618 3.068285 4.265667 2.383909 2.434943 2.071447