Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00896 ATGGCGATAAGAAGACGTCTCCAACCGAGCTACTTCTCCGACGAAGAATCTCTTCCTGAAATCGAGGGACTTTATGAGGAGCACGAGGATCCAATTCAACCTCCCGAACCTGAAAATTTTGATTCTATTCCTGATTCAATTCAAATATCCGACAGCGACGGCGGAGAAGACTTCGTCGACGTCTCTGAATATCTTTCGCCTCCAGCCGATCTGAATACAGATTCTTTTTCGCGTTTGTATTCACAGAACATTTCGTCGACCTCTGGCGAAGCCTCTAATGAGGCTTCAGGCTGTCCTATTAGCGAGTTTCTTTCGTCGTTGGGTTTGAAGTTGACGAGAGAGTGGTTAGATGTTTGCATCCATGGTTTAGAGAGCTCAATACCGAACTTTACTAGCCTTGATATTGAGGCGAAAGCGAAGATGTGTTTCTCGCAGTTTTTGATTTCCGATATGAATATTGCCGGTGCAGGTATCCTCCCCGAAAATGTTCATTCTATGCATCTTGTTAATCTCCGAGGGCCGTTTGTCTTGCAGATTGATGAAACAGTCAACATTAGTTGCCCGCTCCGTGGTAGATACCAGACAGCACCATCTTCGCTCAAGAGGTGCCTCAAGCTTTCCCTGAATGATGGGGTTCAACGTGTGTTTGGCATGGAATACAGGCCCATTAGGGCTCTCGAAGTTCTTGGTCCAGCTGGTTTAAAGGTTGTTATTCGCAATGTACACATACGGCATGGACTTTTATTGCTAGTTCCTGAATCCTTGGAAGTTTTAGGAGGACTAGTTTTGGAACTTGATGAAGCACGGCTGCGGCTTATTGAAGAAGTAAACAAGCCAGCCAGGGGAAGAAGAACCAGGAGTGAAGGGATTCCTCTTTTGGCAACCAGGGCAACTCTTGCTGCATGGCCATCTAACTGTATAAATAGTAATGAATGGGTTGATACTGCAGTATTGGAAGGTCGTACAACCTCTGTGCAAAGTAACTCTGTTCTGCCATGCACTAATACACTTGAGAGGAAGAGTGATGAAGTTTCTGCCCCTGATGCTGAAGAAATTGCTGTCCTAAATCCATCTTCAAATTCTGTTGCGCATGTAGATGAGATCCTCATAATATCTGTACCTAGTGATGAAGAAAATAGCTTGCCTAATCCGGCACCAAATGTTGTTTTGACATCAGAAGCTGTCAATATGATCGTTGATGATTGCCCACTCATGTCATCAGTAAATCAAGAAGTCCCTTTCACGTACTTATCTAGTTTGTCTGCTAAGTGGGCTGCAACCAGCAAGAAATCTTCTTCAGTTCAGGGGAAAATTAAGTGCTTCTTGACTGGTGTAAAGGGATTTCAGTATAAGCAAAGGACGACATACGAACTTAGGGTATTTGTTGATGATGGTAGCCTCATCTCAGAGATACTAATTGATCACAACGTTGTACACAAAGCAGTAGGACATTCTCCCAGAGATGTTACTCTAGCTCTTTCATCTACCGACAGGAAAATAGTTAGTGATATGAAGGAGAACCTGAGAGAGTTCCAAGTTTTCCTGGTTAACTTTGAGGGCATGGTGCTTATTGAAATGAATAATACGTCCCCTCTTCCAATTGCACTTGAGCTGAACCAGGGATGTCCTAAGTCTGATGCTTGGATGCTTTTAAGAAGACTTAAATCTTCAAGGACTTCTCATAGAGCAGCACATCCGCCATTAGATCCAATTGATTTATCCCCTTGA 1728 43.63 MAIRRRLQPSYFSDEESLPEIEGLYEEHEDPIQPPEPENFDSIPDSIQISDSDGGEDFVDVSEYLSPPADLNTDSFSRLYSQNISSTSGEASNEASGCPISEFLSSLGLKLTREWLDVCIHGLESSIPNFTSLDIEAKAKMCFSQFLISDMNIAGAGILPENVHSMHLVNLRGPFVLQIDETVNISCPLRGRYQTAPSSLKRCLKLSLNDGVQRVFGMEYRPIRALEVLGPAGLKVVIRNVHIRHGLLLLVPESLEVLGGLVLELDEARLRLIEEVNKPARGRRTRSEGIPLLATRATLAAWPSNCINSNEWVDTAVLEGRTTSVQSNSVLPCTNTLERKSDEVSAPDAEEIAVLNPSSNSVAHVDEILIISVPSDEENSLPNPAPNVVLTSEAVNMIVDDCPLMSSVNQEVPFTYLSSLSAKWAATSKKSSSVQGKIKCFLTGVKGFQYKQRTTYELRVFVDDGSLISEILIDHNVVHKAVGHSPRDVTLALSSTDRKIVSDMKENLREFQVFLVNFEGMVLIEMNNTSPLPIALELNQGCPKSDAWMLLRRLKSSRTSHRAAHPPLDPIDLSP 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14996009 14999441 - Bpe021737.1 Bpe07g00896 106665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00896 575 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 400 557 - -
Bpe07g00896 575 Pfam RecQ mediated genome instability protein 107 269 IPR013894 -
Bpe07g00896 575 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 95 328 - -
Bpe07g00896 575 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 400 557 - -
Bpe07g00896 575 MobiDBLite consensus disorder prediction 1 54 - -
Bpe07g00896 575 Pfam Recq-mediated genome instability protein 1, C-terminal OB-fold 413 554 IPR032199 GO:0000166
Bpe07g00896 575 SMART DUF1767_2 101 194 IPR033472 -
Bpe07g00896 575 Gene3D - 150 274 IPR042470 -
Bpe07g00896 575 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 95 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00896 K10990 RMI1, BRAP75; RecQ-mediated genome instability protein 1 - jre:109008508 579.326
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g74 . . Bda06g00720 . . . . Bma12g01086 . . Cma10g00048 . Car10g00037 . Sed03g2779 . . Bhi02g00662 Tan09g2394 Cmetu02g0524 . . . . Cla06g01757 Cam06g1949 Cec06g1998 Cco06g2004 Clacu06g1906 Cmu06g1846 Cre06g2660 . . Cone13ag0234 Cone19ag0220 . . . . . Blo15g00201 . . Bpe07g00896 . . . . Cmo10g00043 . . . . . . . . . . . . . . . . . . . . . . Csa01g00040 Chy02g02679 Cme02g02082
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010501 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 0 1 1 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00896 Bpe_Chr07 FPKM 4.488449 3.547627 4.921574 3.006437 11.237067 4.4412 9.613829 4.535291 3.722769 5.341384