Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00907 ATGGCTAGAGTTCTGGTACAGTCCACAAATATTCCGGGGCTAATTTCTGGGCGGAAGCATGCCCAGTTGAGGGATCCTGGAAATGCAAAGTGGGCTGTCAGAATGATGAGCAGTCTACGGTCTCCTGGATTGAGGATGAGAGGTTTCTCAGGATTAAGGGGTTTTAACGATTTAGATACCATGATCAAGCCTGGGCAAGATTTTCATTCCAAAATAGCCATTTTTCTTTCTTCTCGTAGACAAGGAAGGGCCAGCAGATGTGTCCCCAAAGCAATGTTTGAGCGGTTCACTGAAAAAGCGATTAAAGTTATCATGCTTGCCCAAGAGGAAGCAAGACGTCTTGGTCACAATTTTGTTGGTACCGAGCAAATCTTATTAGGTCTTATTGGTGAAGGCACTGGTATTGCTGCAAAAGTTCTCAAATCAATGGGAATTAATCTTAAAGATGCTCGAGTGGAAGTGGAGAAAATAATTGGAAGGGGCAGTGGATTTGTAGCTGTGGAGATTCCGTTCACTCCTCGCGCAAAACGTGTGTTGGAGCTCTCCTTAGAGGAAGCCCGGCAACTTGGCCATAACTATATTGGATCTGAGCATTTGCTTCTCGGATTACTTCGTGAGGGTGAGGGTGTTGCAGCCCGTGTTCTTGAAAATTTAGGTGATTTCTACGGAAATGTTATTCGAATGGTTGGTGAGAGTACAGAGGCTGTTGGCGCTGGTGTTGGAGGTGGAAGTAGTGGGAATAAGATGCCTACATTGGAGGAGTATGGGACGAATTTAACAAAGATGGCAGAGGAGGGAAAATTGGATCCTGTTGTTGGAAGGCAGCAGCAGATTGAACGTGTAACCCAAATTTTGGGTAGGAGGACAAAAAATAATCCGTGCTTGATCGGTGAACCTGGTGTTGGGAAAACTGCAATTGCAGAAGGCCTTGCTCAAAGGATTGCAAATGGGGATGTTCCTGAAACTATAGAAGGAAAGAAGGTTATTACCTTGGACATGGGGCTTCTTGTAGCTGGCACAAAATACCGTGGAGAGTTTGAGGAAAGGTTAAAGAAACTAATGGAAGAGATCAAGCAAAGTGATGAAATAATACTTTTTATAGATGAGGTCCACACATTAATTGGCGCAGGAGCTGCTGAAGGAGCTATTGATGCTGCAAACATATTAAAACCTGCCCTTGCTAGAGGTGAACTGCAGAAACTCAATAATTTCTTTTCGGCGCAGTGTATTGGAGCTACGACATTAGATGAATATAGAAAACACATTGAGAAAGACCCAGCCTTAGAAAGACGATTCCAGCCTGTCAAAGTACCTGAACCAACTGTAGATGAAACCATTCAGATTCTGAAAGGGCTTAGGGAGCGGTATGAGATTCACCACAAGCTGCGCTACACAGATGAAGCTCTAGTGGCAGCTGCACAGTTGTCGTATCAATATATCAGTGATCGATTTCTGCCCGATAAAGCAATTGACTTGATTGACGAAGCTGGTTCTCGGGTTCGGCTTCGCCATGCACAGGCATGTCCTTTTCATACTAAGCTTGCTACAGATCATTCCATTGCATGCCCTCGTACAACTGATACTTATTTTTATATTTTCTTTTTGCAGCTACCTGAGGAAGCCAGGGACCTTGAGAAAGAGCTCAGGCAGATCACCAAAGAAAAGAATGAGGCTGTTAGAGGTCAAGACTTTGAGAAGCAGGCTGGTGAGTTGCGTGATAGAGAAATGGATCTGAAGGCACAGATCTCCACTCTTGTGGATAAGGGCAAGGAGATGAGTAAAGCAGAGAGCGAGGCAGGGGATGTAGGCCCTGTTGTGACTGAAGTCGACATTCAGCATATTGTTTCTTCATGGACTGGCATACCGGTCGAGAAAGTGTCAACTGATGAATCTGATCGGCTTCTGAAAATGGAAGAGACCCTTCACAAGAGGGTCGTTGGACAGGACGAAGCCGTTAAAGCAATCAGCCGTGCCATTCGCCGAGCTCGTGTTGGACTGAAGAACCCCAACCGACCTATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTTGGAAAATCGGAACTGGCCAAAGCGTTGGCTGCTTACTACTTTGGGTCTGAAGAAGCAATGATTCGGCTCGATATGAGTGAATTTATGGAGAGGCACACCGTCTCCAAGCTCATCGGGTCACCCCCTGGCTATGTTGGTTACACCGAAGGCGGGCAACTGACCGAGGCAGTTAGACGTCGCCCATACACTGTCGTCCTCTTTGATGAGATTGAGAAGGCCCACCCCGACGTTTTCAACATGATGCTTCAAATTCTTGAGGACGGAAGGTTGACTGATAGCAAGGGAAGAACTGTGGACTTTAAGAACACTCTTCTCATAATGACATCAAACGTTGGAAGCAGCGTAATAGAGAAAGGAGGTCGAAGAATAGGATTCGATCTCGATTATGATGAGAAAGACAGTAGCTATAACAGAATCAAGAGCTTGGTGACCGAGGAACTGAAACAATACTTCCGGCCAGAATTTTTGAACAGGTTGGACGAGATGATTGTTTTCAGACAACTGACGAAGTTGGAGGTGAAGGAGATAGCGGACATAATGCTAAAGGAGGTCTTCGACAGGCTCAAAGGTAAAGACATCGAACTCCAAGTGACGGAGAGGTTTAGAGATCGAGTGGTTGATGAAGGATACAACCCGAGCTACGGTGCCCGGCCTTTGAGAAGGGCCATAATGAGACTGTTGGAGGACAGCATGGCAGAGAAGATGCTGGCGAGAGAGATCAAGGAGGGTGATTCAGTCATTGTGGATGTCGACTCTGACGGAAACGTTACCGTACTCAACGGTGGTAGTGGGGCCCAACAGTCGTTATCCGATTCGATCACGGTGTCGTAA 2883 46.17 MARVLVQSTNIPGLISGRKHAQLRDPGNAKWAVRMMSSLRSPGLRMRGFSGLRGFNDLDTMIKPGQDFHSKIAIFLSSRRQGRASRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGDFYGNVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKMAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQKLNNFFSAQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQACPFHTKLATDHSIACPRTTDTYFYIFFLQLPEEARDLEKELRQITKEKNEAVRGQDFEKQAGELRDREMDLKAQISTLVDKGKEMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVVGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKGKDIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGGSGAQQSLSDSITVS 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15050510 15055641 - Bpe021748.1 Bpe07g00907 106676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00907 960 Gene3D - 242 441 IPR027417 -
Bpe07g00907 960 Gene3D - 92 231 IPR036628 -
Bpe07g00907 960 SUPERFAMILY Double Clp-N motif 94 220 IPR036628 -
Bpe07g00907 960 Coils Coil 343 363 - -
Bpe07g00907 960 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 77 508 - -
Bpe07g00907 960 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 530 952 - -
Bpe07g00907 960 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 750 768 IPR001270 GO:0005524
Bpe07g00907 960 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 676 694 IPR001270 GO:0005524
Bpe07g00907 960 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 721 739 IPR001270 GO:0005524
Bpe07g00907 960 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 783 797 IPR001270 GO:0005524
Bpe07g00907 960 ProSitePatterns Chaperonins clpA/B signature 2. 706 724 IPR028299 -
Bpe07g00907 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 512 IPR027417 -
Bpe07g00907 960 Pfam AAA lid domain 441 507 IPR041546 -
Bpe07g00907 960 CDD AAA 646 794 - -
Bpe07g00907 960 Gene3D - 603 850 IPR027417 -
Bpe07g00907 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 938 IPR027417 -
Bpe07g00907 960 Gene3D - 442 522 - -
Bpe07g00907 960 Pfam C-terminal, D2-small domain, of ClpB protein 852 932 IPR019489 -
Bpe07g00907 960 ProSitePatterns Chaperonins clpA/B signature 1. 384 396 IPR018368 GO:0005524
Bpe07g00907 960 CDD AAA 272 433 - -
Bpe07g00907 960 PANTHER ATP-DEPENDENT CLP PROTEASE 77 508 - -
Bpe07g00907 960 PANTHER ATP-DEPENDENT CLP PROTEASE 530 952 - -
Bpe07g00907 960 Pfam ATPase family associated with various cellular activities (AAA) 294 415 IPR003959 GO:0005524|GO:0016887
Bpe07g00907 960 Pfam AAA domain (Cdc48 subfamily) 671 845 IPR003959 GO:0005524|GO:0016887
Bpe07g00907 960 Coils Coil 541 561 - -
Bpe07g00907 960 Gene3D - 852 951 - -
Bpe07g00907 960 SMART ClpB_D2_small_2 852 942 IPR019489 -
Bpe07g00907 960 ProSiteProfiles Clp repeat (R) domain profile. 93 235 IPR004176 -
Bpe07g00907 960 Pfam Clp amino terminal domain, pathogenicity island component 107 159 IPR004176 -
Bpe07g00907 960 Pfam Clp amino terminal domain, pathogenicity island component 183 219 IPR004176 -
Bpe07g00907 960 SMART AAA_5 289 438 IPR003593 -
Bpe07g00907 960 SMART AAA_5 672 853 IPR003593 -
Bpe07g00907 960 Gene3D UVR domain 538 595 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00907 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC - psom:113281357 1517.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00143 Bpe-Chr7:1012070 Bpe07g00907 Bpe-Chr7:15050510 3.39E-12 dispersed
Bpe07g00907 Bpe-Chr7:15050510 Bpe14g00156 Bpe-Chr14:1997359 0 dispersed
Bpe12g00459 Bpe-Chr12:10338239 Bpe07g00907 Bpe-Chr7:15050510 5.50E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g29 . . Bda06g00709 Bda15g00698 . . . . . . Cma10g00018 Cma11g00007 Car10g00013 Car11g00006 . . . . . . . . . . Cla06g01783 Cam06g1977 Cec06g2027 Cco06g2035 Clacu06g1934 Cmu06g1875 Cre06g2687 . . Cone13ag0256 Cone19ag0241 . . . . . Blo15g00190 . . Bpe07g00907 . . . . Cmo10g00016 Cmo11g00006 . . . . . Cpe18g00938 . . . . . . . . . . . . . . Lsi06g01681 Csa01g00010 Chy02g02703 Cme02g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00907 Bpe_Chr07 FPKM 0.824074 0.0 0.0 0.0 1.970185 0.901312 1.349703 0.866207 0.425683 1.404967