Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00912 ATGCCTAAAGATATATTGACATGGAATTCTCAAATTGGGGCTTGTGTTAAGAATGCGCGCTATAACGAAGCACTTAAAATTTTTAGAACTATGCTAAACTCGAATGTTCAACCCGATGGATACACATTTGCGTCTGTGATTTCTGGCTGTGCACATCTTGGATCTCTTAATTCAGCACAGTGGGTTCATGGTTTGATGATCGAGAAAAAGATCAAATTGAATTATATACTAAGTTCAGGACTTATAGACATGTACTCAAAGTGTGGTAGAATCCAAACAGCTAGAGAACTGTTTAATCATGTCCCTCATGATGAAGTATCAGTTTGGAATGCAATGATTAATGGGCTGGCAGTGCATGGCCTGGCTCTCGAAGCGATTGAAGTATTTTCAAAAATGGAGGTCAAGAATGTTCCTCCTGATTTGATCACTTTTATCGGTATTTTAACAGCTTGCAGTCGATGTGGGTTGGTCGAAGAGGGTCGACAGTTCTTTGATTTGATGAGATTGCGTTATTTGATTCGGCCGGAACTTGAACATTATGGAGCCATGGTTGATCTCTTCTGTAGAGCTGGCCGTTTGAAAGAGGCTCATGCCCTGATTAAGGACATGCCAATGGAGCCTGATATTGTGATATGGAGGTCATTTCTCAGTGCTTGCAGAATTTACAAAAATCAAGAGTTGGGGGAAAGTGCTATTGCAAATATCTCCGATCCCAAAGGTGGGAACTATGTCTTATTGTCCAACATTTATTGCTCACTTGAGAGATGGGATAGATCAGAGAAAGTCAGAGAAATGATGAGGAAAAATGGAATTCATAAGAACAGCGGAAAGAGCTGGGTTGAACTGGGCAGCGCCATTCACAGCTTTAGAGCTGGTGACTCTTCACACTCTGAAAGCAATGCAATCTATGAAGTGTTGAAAAGATTACTTCATTTGACTAAAGCGAAGGGCTATATGCCTATGACGGAATTGGTCTTCATGGATGTTTCAGAAGAGGAAAAGGAAGAAAATTTGAATCTTCACAGTGAAAAGTTGGCATTGGCTTATGGAATCCTTAAAACTAGCCCTGGAACTGAAATTAGGATTTTGAAAAATCTGCGTATTTGTAATGATTGCCATTGTTGGATGAAAATGGTTTCGATAATCATTAGGAGAGTAATAATCATGAGGGATCGGATCCGTTTTCATAGATTCGAGGACGGATTATGCTCCTGCAGAGATAATTGGTAG 1230 40.08 MPKDILTWNSQIGACVKNARYNEALKIFRTMLNSNVQPDGYTFASVISGCAHLGSLNSAQWVHGLMIEKKIKLNYILSSGLIDMYSKCGRIQTARELFNHVPHDEVSVWNAMINGLAVHGLALEAIEVFSKMEVKNVPPDLITFIGILTACSRCGLVEEGRQFFDLMRLRYLIRPELEHYGAMVDLFCRAGRLKEAHALIKDMPMEPDIVIWRSFLSACRIYKNQELGESAIANISDPKGGNYVLLSNIYCSLERWDRSEKVREMMRKNGIHKNSGKSWVELGSAIHSFRAGDSSHSESNAIYEVLKRLLHLTKAKGYMPMTELVFMDVSEEEKEENLNLHSEKLALAYGILKTSPGTEIRILKNLRICNDCHCWMKMVSIIIRRVIIMRDRIRFHRFEDGLCSCRDNW 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15089611 15090840 + Bpe021753.1 Bpe07g00912 106681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00912 409 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Bpe07g00912 409 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 4 38 IPR002885 -
Bpe07g00912 409 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 392 - -
Bpe07g00912 409 Pfam E motif 222 281 IPR046848 -
Bpe07g00912 409 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 39 73 IPR002885 -
Bpe07g00912 409 TIGRFAM PPR: pentatricopeptide repeat domain 7 39 IPR002885 -
Bpe07g00912 409 TIGRFAM PPR: pentatricopeptide repeat domain 180 204 IPR002885 -
Bpe07g00912 409 TIGRFAM PPR: pentatricopeptide repeat domain 108 140 IPR002885 -
Bpe07g00912 409 Pfam DYW family of nucleic acid deaminases 317 409 IPR032867 GO:0008270
Bpe07g00912 409 Pfam PPR repeat 179 204 IPR002885 -
Bpe07g00912 409 Pfam PPR repeat 81 99 IPR002885 -
Bpe07g00912 409 Gene3D Tetratricopeptide repeat domain 1 79 IPR011990 GO:0005515
Bpe07g00912 409 Gene3D Tetratricopeptide repeat domain 80 301 IPR011990 GO:0005515
Bpe07g00912 409 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 392 - -
Bpe07g00912 409 Pfam PPR repeat family 3 51 IPR002885 -
Bpe07g00912 409 Pfam PPR repeat family 106 152 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00912 - - - vvi:100247459 606.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00912 Bpe-Chr7:15089611 Bpe05g00189 Bpe-Chr5:8457241 8.32E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g11 . . Bda06g00704 . . . . Bma12g01100 . . Cma10g00008 . Car10g00005 . . . . . . . . . . . Cla06g01789 . . . . . . . . . . . . . . . . . . Bpe07g00912 . . . . Cmo10g00006 . . . . . . Cpe18g00944 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012825 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00912 Bpe_Chr07 FPKM 5.433953 6.383421 6.328585 5.610519 1.423414 1.934564 1.577339 29.146616 26.043537 26.464235