Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00938 ATGGAGAGCTCTACATTGTCTGGCTTGATGAAAATGGTGGCTCAAGAGTTCCCGACTCGCTGGGCTCTTTCAGTCACCGGAAAATTCGAATTAACGCATTCTCGGCTTCAAGAACTCGTAGAATCGGCCGCTTCAAAACTGATAGCCGGTAACGTCAAGCCAGGCGATGTGGTCGCCCTCGTTTTTCCGAATACCGTCGAGTTTGTGATTTCGTTTTTGGCTGTGATCCGAGCACGAGCGATGGCGGCGCCATTGAATGCAGCGTACACTGCCGAAGAGTTCGAGTTCTACTTATCTGACTCCGGTTCCAAGCTTCTACTAACCTCTATAGAAGGAAATACCTCGGCTGAAACCGCCGTTTTGAAGCTCCAAATTCCATGCGCCACCGTACTTCTTTCTCATTCAGACGCCGATGTAAACATTTCCTTGCCGGGATCAGACCGGTTCGCCTCCTTAGCTGACTTCGTAAACCTGCCTTCCGACGCTGCGCTGTTTCTTCACACTTCCGGCACCACTAGCCGTCCTAAAGGTGTTCCGTTAACTCAGTTCAATTTGGCTTCGACGGTGAAAAATATAAAATCGGTTTACAAAATCGTGGAATCCGACTCGACTGTGATTGTTCTTCCGTTATTTCACGTACACGGTTTATTAGCCGGATTGCTGAGCTCACTAGGCGCTGGAGCTGCCGTTGCTCTCCCGGCAGCCGGCCGATTCTCCATATCATCTTTTTGGTCGGACATGCACCGGTACGAAGCCACATGGTACACTGCCGTCCCGACGATTCACCAAATCATATTGGACCACCATTCGATTCATCCGGAACCCCTTTACCCAAAGCTTCGATTCATTCGAAGCTGCAGTGCATCTCTTGCTCCGGCCATCATGACCCGACTTGAGGAAGCATTCGGGGCTCCAGTGTTAGAGGCCTACGCGATGACGGAAGCGACCCATCTCATGGCGTCAAACCCGTTACCAGAAAACGGGCCACACAAACCCGGGTCGGTCGGGAGACCCGTCGGGCAAGAAATGGTGATATTAGATGAAAATGGTTTGATTCAGGAGAAAGAAATCAAAGGGGAGATTTGCATCAGAGGACCCAATGTGACTAATGGGTACAAAAACAACGCTCAGGCAAATAAGAGTGCGTTTCAGTTCGGGTACTTTCACACCGGAGATATCGGGTATTTTGATTCGGATGGGTATTTGCATCTCGTGGGTCGGATCAAGGAACTCATTAACCGTGGAGGAGAAAAAATATCACCGATTGAAGTAGATGCAGTTCTGTTGTCTCACGAAGACATTGCGCAAGCCGTTGCGTTTGGAGTACCTGATGAAAAGTATGGCGAGGAGATAAACTGTGCGATAATTCCAAGAGAAGGATCAGAAATGAATGAAGAAGAGGTGCTAAGGTTCTGCAAGAAGAACCTGGCAGGCTTTAAAGTACCAAAAAGGGTATTCATGACAGACTCTCTTCCAAAGACAGCCAGTGGCAAAATCCAGAGGAGGATTGTGGCTGAGCACTTCCTTTCCCAGATATCTACTGCAAGTGTCTCCAAATCCGGGGCCTAA 1569 49.14 MESSTLSGLMKMVAQEFPTRWALSVTGKFELTHSRLQELVESAASKLIAGNVKPGDVVALVFPNTVEFVISFLAVIRARAMAAPLNAAYTAEEFEFYLSDSGSKLLLTSIEGNTSAETAVLKLQIPCATVLLSHSDADVNISLPGSDRFASLADFVNLPSDAALFLHTSGTTSRPKGVPLTQFNLASTVKNIKSVYKIVESDSTVIVLPLFHVHGLLAGLLSSLGAGAAVALPAAGRFSISSFWSDMHRYEATWYTAVPTIHQIILDHHSIHPEPLYPKLRFIRSCSASLAPAIMTRLEEAFGAPVLEAYAMTEATHLMASNPLPENGPHKPGSVGRPVGQEMVILDENGLIQEKEIKGEICIRGPNVTNGYKNNAQANKSAFQFGYFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHEDIAQAVAFGVPDEKYGEEINCAIIPREGSEMNEEEVLRFCKKNLAGFKVPKRVFMTDSLPKTASGKIQRRIVAEHFLSQISTASVSKSGA 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15264246 15266571 + Bpe021780.1 Bpe07g00938 106707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00938 522 Pfam AMP-binding enzyme C-terminal domain 423 498 IPR025110 -
Bpe07g00938 522 CDD FACL_fum10p_like 18 506 IPR045310 GO:0016874
Bpe07g00938 522 SUPERFAMILY Acetyl-CoA synthetase-like 5 511 - -
Bpe07g00938 522 Pfam AMP-binding enzyme 13 414 IPR000873 -
Bpe07g00938 522 ProSitePatterns Putative AMP-binding domain signature. 165 176 IPR020845 -
Bpe07g00938 522 Gene3D - 408 511 IPR045851 -
Bpe07g00938 522 Gene3D - 5 407 IPR042099 -
Bpe07g00938 522 PANTHER ACYL-COA SYNTHETASE 3 522 - -
Bpe07g00938 522 PANTHER OXALATE--COA LIGASE-LIKE 3 522 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00938 K22133 AAE3; oxalate---CoA ligase [EC:6.2.1.8] - vvi:100256632 792.727
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00938 Bpe-Chr7:15264246 Bpe11g00825 Bpe-Chr11:6153213 2.44E-59 dispersed
Bpe10g00654 Bpe-Chr10:13180539 Bpe07g00938 Bpe-Chr7:15264246 2.37E-32 dispersed
Bpe14g01340 Bpe-Chr14:10651821 Bpe07g00938 Bpe-Chr7:15264246 4.25E-34 dispersed
Bpe07g00938 Bpe-Chr7:15264246 Bpe08g01491 Bpe-Chr8:15606590 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g689 . Blo15g00167 . . . Bpe07g00938 . . . . . Cma15g01097 . Car15g01008 . . . . . . . . . . Cla01g00434 Cam01g0457 Cec01g0446 Cco01g0468 Clacu01g0456 Cmu01g0435 Cre09g2077 . . . . . . Chy09g01213 . . . Bda06g00683 . . . . Bma12g01121 . . Cmo15g01155 . . . . . Cpe13g00254 Bhi12g00510 . . Lac11g0027 Hepe06g0701 . Lcy12g0025 . . . . . . . . . . Cme09g01750
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002220 2 2 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 3 3 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00938 Bpe_Chr07 FPKM 7.464789 7.909417 13.092168 13.992496 14.236983 15.761984 15.210007 13.738422 13.725784 13.346203