Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00940 TTCTCGAAGCAGAAGGTGGTTTTAAAGGTGATGACGATGACCGACGAGAAAACAAAGCAGAGAGCCATAGAAGCAGCTGCAGACATCTACGGGGTCGATTCGATCGCAGCAGATCTGAAGGAGCAGAAGCTGACGGTGGTTGGATCAATGGATGCCGTGAAGATAGTGAAGAGATTGAAGAAAGTAGGGAAGGTGGATATACTATCAGTTGGACCGGCTAAAGAAGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAGAAGAAGGAAGAGAAGAAAGAGGATCAGAAAAAATAA 300 45.0 FSKQKVVLKVMTMTDEKTKQRAIEAAADIYGVDSIAADLKEQKLTVVGSMDAVKIVKRLKKVGKVDILSVGPAKEEKKEEKKEEKKEEKKEEKKEDQKK 99
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15272828 15273217 + Bpe021782.1 Bpe07g00940 106709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00940 99 Gene3D - 1 76 - -
Bpe07g00940 99 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 2 97 - -
Bpe07g00940 99 PANTHER PROTEIN PXR1-LIKE ISOFORM X1 2 97 - -
Bpe07g00940 99 MobiDBLite consensus disorder prediction 72 99 - -
Bpe07g00940 99 Pfam Heavy-metal-associated domain 8 64 IPR006121 GO:0046872
Bpe07g00940 99 SUPERFAMILY HMA, heavy metal-associated domain 4 64 IPR036163 GO:0046872
Bpe07g00940 99 Coils Coil 73 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00940 - - - csv:101208339 125.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00926 Bpe-Chr4:6190729 Bpe07g00940 Bpe-Chr7:15272828 5.17E-16 dispersed
Bpe07g00940 Bpe-Chr7:15272828 Bpe13g00958 Bpe-Chr13:15450685 2.04E-17 dispersed
Bpe03g00155 Bpe-Chr3:2009331 Bpe07g00940 Bpe-Chr7:15272828 7.62E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g667 Blo06g01123 Blo15g00165 . . . Bpe07g00940 . . . . Cma02g01066 . Car02g00810 . . Cpe05g00653 . . . . . . . . . . . . . . . Cone1ag1156 . Cone14ag0087 Cone15ag0091 . . . . . . Bda06g00681 Bda15g00729 . . . Bma12g01123 . Cmo02g01084 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004263 3 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 1 0 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00940 Bpe_Chr07 FPKM 79.369919 83.8545 75.374321 76.169846 85.250381 89.953217 87.899857 95.075272 93.123741 95.403366