Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00941 ATGAATTGCTTCTCCCCCATTCCCAATCAGAATCTTCAGGGCCCGGCCGGAGTTGCAGAACGAAAGGGAAGAAGCCCAGACCCAGAAAAAAACGATGAAGAAGAGAGAGCTAGATGCGAATGGGATATCAGTTTGGCTACTGTTGTTGCTACTACCTCTGTCACAGCCGGCTCCGACACTCTCGGAGTTACTGAATTTGACCCTACTGGTTCCATTTTGGCCACTGGAGGAATCTCCAGAAAGATTCGGATTTACACTCTGAATTCTCTGTTGCCCCACCCTGAAACTTTCATCGGAGAAAATCCCGGCGTTTCTCTCCTGGATCACGATAAAGCCTGTAGCTTTTACATTTGTACGCCTGCGAAGCTGAGCAGTCTACGTTGGCGCCCCGGAGAAGACGGCCGGGTCTTGGGGTCCGGCGACTACGACGGGGTGGTCACCGAGTACGATCTTGACCGGCAAACACCTGTTTTCGAGCGGGACGAGCACGGCGGGCGGCGGGTTTGGAGCGTTGATTATTCGAATTTCGATCCGATTCTGGGGGCATCCGGGTCAGACGATGGAACAGTGCAGATGTGGGACCCGCGGTGTGAGAGTGGGGAATGTGTGGCTAAGGTGCAGCCCAGCCTAACAGGCAGTCCAGTTTGTTGCGTAGAGTTCAATCCCTTCTGTGGATCAATCTTAGCCGTTGGATGTGCTGACCGAAAAGTATACGCCTATGATATCCGAAAAATGGCTGACCCAATAAAGATTTTTGCCGGGCATAGAAGAACCGTGACATACATTAGATTTCTCGACCATGCTACAATGATATCAGCCAGCACAGACGGATGCTTAAAATTATGGGATGCAGAAAACTCTAATGCAATTCGCACGTACAAAGGGCATGTGAACATTCGAAATTTTGTCGGGTTATCAGTGTGGAGAAACGGAGGGCTAATTGGGTGTGGTTCGGAAAACAATCAAGTATTTGTATACGACAAGAGGTGGGGGGAGAGAATTTGGGTGCATGATTTTGAGTCGACGGGTACTTTGAGATCGAGCAATGGGTTCGTGAGCAGCGTGTGTTGGAGGCAAGTGGGTGTAGATGAATGCACTCTAGTGGCCGGTGGGTCGGACGGGGTTTTGCAAGTTTTTGTTGGCAAGAGGAAGCCAATTTAA 1161 50.3 MNCFSPIPNQNLQGPAGVAERKGRSPDPEKNDEEERARCEWDISLATVVATTSVTAGSDTLGVTEFDPTGSILATGGISRKIRIYTLNSLLPHPETFIGENPGVSLLDHDKACSFYICTPAKLSSLRWRPGEDGRVLGSGDYDGVVTEYDLDRQTPVFERDEHGGRRVWSVDYSNFDPILGASGSDDGTVQMWDPRCESGECVAKVQPSLTGSPVCCVEFNPFCGSILAVGCADRKVYAYDIRKMADPIKIFAGHRRTVTYIRFLDHATMISASTDGCLKLWDAENSNAIRTYKGHVNIRNFVGLSVWRNGGLIGCGSENNQVFVYDKRWGERIWVHDFESTGTLRSSNGFVSSVCWRQVGVDECTLVAGGSDGVLQVFVGKRKPI 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15282151 15283311 - Bpe021783.1 Bpe07g00941 106710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00941 386 SUPERFAMILY WD40 repeat-like 64 379 IPR036322 GO:0005515
Bpe07g00941 386 MobiDBLite consensus disorder prediction 1 36 - -
Bpe07g00941 386 Gene3D - 39 380 IPR015943 GO:0005515
Bpe07g00941 386 Pfam WD domain, G-beta repeat 247 283 IPR001680 GO:0005515
Bpe07g00941 386 Pfam WD domain, G-beta repeat 162 194 IPR001680 GO:0005515
Bpe07g00941 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 292 IPR001680 GO:0005515
Bpe07g00941 386 SMART WD40_4 47 86 IPR001680 GO:0005515
Bpe07g00941 386 SMART WD40_4 286 327 IPR001680 GO:0005515
Bpe07g00941 386 SMART WD40_4 338 380 IPR001680 GO:0005515
Bpe07g00941 386 SMART WD40_4 153 194 IPR001680 GO:0005515
Bpe07g00941 386 SMART WD40_4 199 241 IPR001680 GO:0005515
Bpe07g00941 386 SMART WD40_4 109 150 IPR001680 GO:0005515
Bpe07g00941 386 SMART WD40_4 245 283 IPR001680 GO:0005515
Bpe07g00941 386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 286 - -
Bpe07g00941 386 ProSitePatterns Trp-Asp (WD) repeats signature. 270 284 IPR019775 -
Bpe07g00941 386 MobiDBLite consensus disorder prediction 22 36 - -
Bpe07g00941 386 PANTHER WD REPEAT-CONTAINING PROTEIN RUP1 23 384 IPR044616 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00941 K10143 RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27] - jre:108998670 543.888
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00941 Bpe12g00423 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00941 Bpe-Chr7:15282151 Bpe14g00620 Bpe-Chr14:5124680 3.38E-61 dispersed
Bpe12g00423 Bpe-Chr12:9828790 Bpe07g00941 Bpe-Chr7:15282151 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g656 . Blo15g00164 . . . Bpe07g00941 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda06g00679 Bda15g00733 . Bpe12g00423 Bma08g00337 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008150 3 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00941 Bpe_Chr07 FPKM 18.089869 19.205179 25.226717 24.848351 20.004801 19.054369 21.998476 22.407328 21.879042 21.091867