Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g01020 ATGGCGAAGGCGGTGGTTTATACCCTTCTAGCCACCGCCCTCTTCATCTTTCTAGTCTTCCCACCTTCCGGCCGAAGACGCAACAAACCCACCGCCTTGAACCGCCGTCTCGGCTCCACATTCCCAATCCCCACTTTCGATCCTTTAGTCGCGGAAATGGAACGAAATGCAGAGCCCGCCGAAAATCCCCCCGTTCCGAACAAAACTAGTTTTTCCGACGAGGTTGCCGACGCGAATCAATATTTCAGCGACGAGGGGAAACTGAACATCACCTTGAGGTTGGTCGTTTTGTTTCCCTTCCTGGATCAGGCGCCCAAAGACGGCGTTATTAATTTCGAGGAGCTAAGCGCTTGGCTCACCCAGCAAGCCGTTGAAAGATTGATTCATCGCACCCAGAAAGAGCTCGATTCTCATGACCGGAATGGCGACGCCGCCATTTCATTCGGGGAGTATCTGCCCCAATTTTCTCAACAAGATATAGCCAAAAATGGAATGGAACATGGAGAGGCTGGATGGTGGAAGCAAAAATTTAGCAATGCTGATGCTGACCAGAACGGATATCTGAACTTCGATGAATTTCATGACTTCCTCCACCCAGAAGACAGTAATAATTCCCGAATGCAGACATGGTTGTTGAGAGAGAAAATCAAACGCATGGATCACGATGACGACGACAAACTCAGTTTCCTGGAATTTCTGGAGCGTGCTTACGATACCTATCAGAACTACTTCGAATTCGAAAATGAAGGAGCTGATGCGCCAACTGCGGAAGAGAAATTTGCAGAGCTTGATCTTGACAAGAACAAATTCTTGGACGCAGAAGAACTGAAACCTATTATACATTATCTTCAACCTGGAGAGGTGTCCTACGCCAAATATTACACCAGCTACCTGATTCGTGAGGTGGATGAAAACGGTGACGGCGAGATAACACTTGAAGAGATGCTAAATCATGAATACATATTCTATAATACTGTGTACGAGAAGAAGAATGAGGACGACGACGACGACGACGACTTTCATGATGAACTTTGA 1035 47.15 MAKAVVYTLLATALFIFLVFPPSGRRRNKPTALNRRLGSTFPIPTFDPLVAEMERNAEPAENPPVPNKTSFSDEVADANQYFSDEGKLNITLRLVVLFPFLDQAPKDGVINFEELSAWLTQQAVERLIHRTQKELDSHDRNGDAAISFGEYLPQFSQQDIAKNGMEHGEAGWWKQKFSNADADQNGYLNFDEFHDFLHPEDSNNSRMQTWLLREKIKRMDHDDDDKLSFLEFLERAYDTYQNYFEFENEGADAPTAEEKFAELDLDKNKFLDAEELKPIIHYLQPGEVSYAKYYTSYLIREVDENGDGEITLEEMLNHEYIFYNTVYEKKNEDDDDDDDFHDEL 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15802380 15803807 - Bpe021864.1 Bpe07g01020 106789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g01020 344 Gene3D - 154 235 - -
Bpe07g01020 344 ProSiteProfiles EF-hand calcium-binding domain profile. 251 286 IPR002048 GO:0005509
Bpe07g01020 344 PANTHER RETICULOCALBIN 1 344 - -
Bpe07g01020 344 SUPERFAMILY EF-hand 96 196 IPR011992 -
Bpe07g01020 344 ProSiteProfiles EF-hand calcium-binding domain profile. 168 203 IPR002048 GO:0005509
Bpe07g01020 344 Pfam EF-hand domain pair 257 317 IPR002048 GO:0005509
Bpe07g01020 344 Pfam EF-hand domain pair 174 234 IPR002048 GO:0005509
Bpe07g01020 344 Gene3D - 93 153 - -
Bpe07g01020 344 SUPERFAMILY EF-hand 168 322 IPR011992 -
Bpe07g01020 344 ProSitePatterns EF-hand calcium-binding domain. 220 232 IPR018247 -
Bpe07g01020 344 ProSitePatterns EF-hand calcium-binding domain. 303 315 IPR018247 -
Bpe07g01020 344 ProSitePatterns EF-hand calcium-binding domain. 264 276 IPR018247 -
Bpe07g01020 344 Gene3D - 236 321 - -
Bpe07g01020 344 SMART efh_1 294 322 IPR002048 GO:0005509
Bpe07g01020 344 SMART efh_1 172 200 IPR002048 GO:0005509
Bpe07g01020 344 SMART efh_1 255 283 IPR002048 GO:0005509
Bpe07g01020 344 SMART efh_1 211 239 IPR002048 GO:0005509
Bpe07g01020 344 ProSitePatterns EF-hand calcium-binding domain. 181 193 IPR018247 -
Bpe07g01020 344 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g01020 K23901 CALU; calumenin - qsu:112034577 405.986
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g01020 Bpe-Chr7:15802380 Bpe15g01403 Bpe-Chr15:21933105 6.40E-63 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1018 . Blo15g00083 . . . Bpe07g01020 . . . . . . . . Sed07g2373 . . Bhi01g01509 Tan01g0073 Cmetu06g2632 . Hepe07g0046 Mch10g0046 . . . . . . . . Cone1ag0997 . . . . . . Cme06g01158 . . . . . . . Bma12g01216 . . . . . . Car18g01232 . . . . . . . . . Cla05g00982 Cam05g1073 Cec05g1080 Cco05g1072 Clacu05g1067 Cmu05g1018 Cre05g1092 . Csa03g01971 Chy06g01184 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012485 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g01020 Bpe_Chr07 FPKM 30.205309 30.376595 20.18932 21.084419 0.0 0.0 0.260642 0.0 0.0 0.0