Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g01024 ATGGATAGCTTCAGTCACTACGAAGAAAGTCAATTTTTCGATGCCCAAGAGGATATCTTGTCGTCTTCTGAAGCAAGTAGGGATAGCATTGAGGTAAATAATTCTAATTTTGGTTTTAACGCATTGGTTGAGGGGAGTTTCGTGTATGATTTATGGAGTCCAAGTCCTCTGAGTGTTAACGAGCGACGTACAAAGTTTTTGAGAATGATGGGACTAAAGTTAGACCAAATTTCGGGTGATAATTCTGTAGTTGTTCACAGCAATGTGAGCGGTGGAGAGTCTACGAGGGAAAATGGAGAGGCTATGGCGGGCATTCCAGCATTTGAAGATGGGTTTTATTCGAGTCGATCATCAATGTCGTGTTTCTCTAGCGAGAGCTGTGGAGATTTAGAGGAATTGAGATCGAAGAAGAATTTTTTGTGCAGCGATGGAACTGCAGATTACAATTGCTCAGGCGAGTCATCAAGCAGTTGTTCATCACAATCGTCTCAACAACAGAAGGAATCGATACCTGCAAATTTGAGATGTTTTGAGGATATGACTAGAATAGTTGATAAGAGTTGGTTGAGGAGGTTAAGCTCCATTGCATACGTGTTTGATAGTCAAAATAAAGGAGTTAAATTCAAATCGTTCAATGAAGATGAAGGTCAGACGTTTAGAGTTCAGAGAGTTAAGGTTCGGCAGAGCAAGAAACAATCGAAGGAACTCTCTGCTCTCTTTACAGGTCACGATATCCAGGCTCATGAAGGTGCTATATTGGCCATGAAATTCAGTCTGGATGGGAGGTATCTTGCAAGCGGCGGCGAAGATGGGATAGTGAAAGTCTGGCAAGTGATTGAGGATGAGAGATCGAACGAACGTGATTTTCCGGTTTTTGATCAGTCCTGCATTTACTTCTCTGTGAATCATCTCTCTGAACTGAAACCACTACTCATGGATAAAGACAAACTTTGCAACTCAACAAGTTTGAAAAAAACATCTGAATCGGCCTGCGTCATTTTCCCTCCTAAAATCTTCCGAATATTGGAGAAACCATTGCACGAGTTCTGCGGCCACAATTGCGAGATTTTGGATCTCTCATGGTCACAGGAGAAGTATCTCCTTTCGTCGTCTGTCGACAAAACTGTTCGTCTTTGGCAGGTTGGAAGCAAAGATTGCCTCAAAGTATTTTCGCATAGCAATTACGTGACATGCGTGCAGTTTAACCCAGTGGATGAAAATTACTTCATGAGCGGATCGATAGATGGAAAAGTACGGATTTGGGGAATTTCTTGTTCCCAAGTTGTGGGTTGGACCAACATTAGAGAGATAGTTACTGCAGTGTGTTATCGTCCTGACGGACAGGGTAGTGTTGTCGGCTCAATTGATGGAAACTGTCGCTTTTATAGTATTTCAGCAGATAATCATCTGCAATTGGAAGCTCAAATTGGCTTGCACGACAAGAAGAAATCGGCGAGTAAGAAGATAACAAGCTTTCAGTTTCTTCCTCAAGATTCTAGCATGCTAATGGTTAGCTCTGCCGATTCCCAAATCAGAATTCTTCACGGCCCTAACGTGATCGGTAAATACAAAGGAATTCGTGGTGCCAGAAACCAGATTTCTGCATCTCTTACATCAGACGGAAAATATATAATCTCAGCTTGTGGGAATTCTAATGTATATGTATGGAACTGCGGGGACCGAAACGATACTTCACTGTCCCGAGCCAAAAGATGTTATGAACACTTCTCGGCCAATGCTTCCATTGCAATTCCTTGGAGTGGTTTCGGTTGTGGGAACTTGAACTGTGTAAGGCAGTTTCGCGGATTCGACTGGGAATCATCAGAACTTCTGCCTTTCTCATCATCTGTGCGATTCTCTCTAAACCAGGAATTCTGCTTGGAGTCTTTGCCGAAAGGATCTGCGACTTGGCCTGAAGAGAAAATTCCTACTTCGAGCAACCTAAGGATGGATAAATCTCGATACAAGTTTCTCAAGGAGTCTTGCCGGGGTGCATCTGAGTCCCATGCGTGGGGGCTGGTTATCGTGACTGCTGGCAGGGACGGCCGAATAAGGTGGTTTCACAATTATGGATTACCGGCACCTGTTTGA 2091 43.38 MDSFSHYEESQFFDAQEDILSSSEASRDSIEVNNSNFGFNALVEGSFVYDLWSPSPLSVNERRTKFLRMMGLKLDQISGDNSVVVHSNVSGGESTRENGEAMAGIPAFEDGFYSSRSSMSCFSSESCGDLEELRSKKNFLCSDGTADYNCSGESSSSCSSQSSQQQKESIPANLRCFEDMTRIVDKSWLRRLSSIAYVFDSQNKGVKFKSFNEDEGQTFRVQRVKVRQSKKQSKELSALFTGHDIQAHEGAILAMKFSLDGRYLASGGEDGIVKVWQVIEDERSNERDFPVFDQSCIYFSVNHLSELKPLLMDKDKLCNSTSLKKTSESACVIFPPKIFRILEKPLHEFCGHNCEILDLSWSQEKYLLSSSVDKTVRLWQVGSKDCLKVFSHSNYVTCVQFNPVDENYFMSGSIDGKVRIWGISCSQVVGWTNIREIVTAVCYRPDGQGSVVGSIDGNCRFYSISADNHLQLEAQIGLHDKKKSASKKITSFQFLPQDSSMLMVSSADSQIRILHGPNVIGKYKGIRGARNQISASLTSDGKYIISACGNSNVYVWNCGDRNDTSLSRAKRCYEHFSANASIAIPWSGFGCGNLNCVRQFRGFDWESSELLPFSSSVRFSLNQEFCLESLPKGSATWPEEKIPTSSNLRMDKSRYKFLKESCRGASESHAWGLVIVTAGRDGRIRWFHNYGLPAPV 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15814925 15817860 - Bpe021868.1 Bpe07g01024 106793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g01024 696 Pfam WD domain, G-beta repeat 240 276 IPR001680 GO:0005515
Bpe07g01024 696 Pfam WD domain, G-beta repeat 344 379 IPR001680 GO:0005515
Bpe07g01024 696 Pfam WD domain, G-beta repeat 385 421 IPR001680 GO:0005515
Bpe07g01024 696 SMART WD40_4 383 422 IPR001680 GO:0005515
Bpe07g01024 696 SMART WD40_4 469 515 IPR001680 GO:0005515
Bpe07g01024 696 SMART WD40_4 516 557 IPR001680 GO:0005515
Bpe07g01024 696 SMART WD40_4 342 380 IPR001680 GO:0005515
Bpe07g01024 696 SMART WD40_4 424 463 IPR001680 GO:0005515
Bpe07g01024 696 SMART WD40_4 233 277 IPR001680 GO:0005515
Bpe07g01024 696 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 424 IPR001680 GO:0005515
Bpe07g01024 696 Gene3D - 226 581 IPR015943 GO:0005515
Bpe07g01024 696 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 389 424 - -
Bpe07g01024 696 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 278 - -
Bpe07g01024 696 SUPERFAMILY WD40 repeat-like 245 686 IPR036322 GO:0005515
Bpe07g01024 696 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 389 IPR001680 GO:0005515
Bpe07g01024 696 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 286 IPR001680 GO:0005515
Bpe07g01024 696 PRINTS G protein beta WD-40 repeat signature 409 423 IPR020472 -
Bpe07g01024 696 PRINTS G protein beta WD-40 repeat signature 264 278 IPR020472 -
Bpe07g01024 696 PRINTS G protein beta WD-40 repeat signature 367 381 IPR020472 -
Bpe07g01024 696 PANTHER WD REPEAT DOMAIN 44 7 695 IPR040324 -
Bpe07g01024 696 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 695 - -
Bpe07g01024 696 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 381 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g01024 - - - pmum:103333609 761.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g01024 Bpe12g00345 CCT
Bpe07g01024 Bpe12g00345 ECH
Bpe03g00197 Bpe07g01024 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g01024 Bpe-Chr7:15814925 Bpe12g00345 Bpe-Chr12:8523026 0 dispersed
Bpe07g01024 Bpe-Chr7:15814925 Bpe10g00239 Bpe-Chr10:8819226 5.82E-122 transposed
Bpe07g01024 Bpe-Chr7:15814925 Bpe06g00273 Bpe-Chr6:13662358 2.00E-121 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g01024 Bpe_Chr07 FPKM 3.947347 3.802288 0.598431 1.273138 11.176065 10.645177 11.122484 0.244214 0.199149 0.183592