Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g01026 ATGGCGGCCTTCACTTCCATTGCCCCTAACTTATCGTCCTCCTTCGACCCAAAATGCCCACCCTCCTCTAAACCAGTCTCCGACCATTGTTCTTTCACTTTCTCTTTAGGATCCATTCGTTACTCCACCCAAACCTCTTCTTCGCCTGCTATCTCAATCTCCAGAGGCCTCCAAATCCAGAGCGCGGCGACTAAACCTGCGAAATCACCAGTTAGAACGATTCTGAGTTTGGACTTTGTTGTTCGCCTGTTTTTGGAGAAATTAGCGGAAGAGGACTGGAAGATTAAGCGGGAAGTTCTACTGCAGAAGAAGGTGAGGAGCGTGGATGTGAAAGAAGCTCTGCGTCTTCAAAATGAAAATAACTTCGTGATTCTTGACGTTAGACCTGAAGCAGAGTTCAAAGAGGGCCATCCACCGGGCGCAATTAACGTGCAAATATACAGGCTGATAAAGGAGTGGACAGCTTGGGACATCGCTAGGCGAGCTGCCTTTGCATTTTTCGGCATCTTCTCTGGAACTGAAGAGAACCCAGAATTTCTCCAAATTGTGGAATCAAAGATATCTAAAGACGCTAAGATAATAGTCGCCTGCTCTTCTGGGGGAACCATGAAACCCACCCAAAATCTTCCTGAAGGTCAACAATCAAGATCGCTGATAGCAGCCTACTTGCTGGTTCTAAATGGTTACACCAACGTGTTTCACTTAGAAGGAGGCCTGTATTCGTGGTTCAAGGAAGGACTTCCAGTAGAGGCAGAAAATTAA 762 46.59 MAAFTSIAPNLSSSFDPKCPPSSKPVSDHCSFTFSLGSIRYSTQTSSSPAISISRGLQIQSAATKPAKSPVRTILSLDFVVRLFLEKLAEEDWKIKREVLLQKKVRSVDVKEALRLQNENNFVILDVRPEAEFKEGHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQIVESKISKDAKIIVACSSGGTMKPTQNLPEGQQSRSLIAAYLLVLNGYTNVFHLEGGLYSWFKEGLPVEAEN 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15824111 15825195 + Bpe021870.1 Bpe07g01026 106795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g01026 253 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 102 250 IPR036873 -
Bpe07g01026 253 ProSiteProfiles Rhodanese domain profile. 118 251 IPR001763 -
Bpe07g01026 253 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC 29 252 - -
Bpe07g01026 253 Gene3D - 92 251 IPR036873 -
Bpe07g01026 253 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC-RELATED 29 252 IPR043186 -
Bpe07g01026 253 SMART rhod_4 108 248 IPR001763 -
Bpe07g01026 253 CDD RHOD 112 242 - -
Bpe07g01026 253 Pfam Rhodanese-like domain 110 243 IPR001763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g01026 - - - vvi:100245212 332.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01274 Bpe-Chr4:18726770 Bpe07g01026 Bpe-Chr7:15824111 3.43E-07 dispersed
Bpe07g01026 Bpe-Chr7:15824111 Bpe14g01334 Bpe-Chr14:10587995 2.23E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g997 . Blo15g00078 . . . Bpe07g01026 . . Cmo16g00036 . . . . . Sed07g0876 . Cpe14g00024 Bhi01g01519 Tan01g0061 Cmetu06g0246 . Hepe07g0039 Mch10g0037 . . . . . . . . . . . Cone15ag0001 . . . Cme06g01169 . . Bda06g00795 . . . . Bma12g01221 . . . Cma16g00031 . Car16g00029 . . . . . . . . . . Cla05g00987 Cam05g1078 Cec05g1086 Cco05g1080 Clacu05g1072 Cmu05g1022 Cre05g1096 . Csa03g01965 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe15g00555 . 36 309 Sulfurtransferasese/Rhodanese AT5G23060 62.6 1.9e-87 319.3
Bpe13g00981 . 444 816 Sulfurtransferasese/Rhodanese AT4G01050 59.0 5.0e-117 418.3
Bpe02g01838 . 6 615 Sulfurtransferasese/Rhodanese AT1G09280 63.6 2.3e-222 768.5
Bpe04g01938 . 100 474 Sulfurtransferasese/Rhodanese AT2G40760 70.8 1.1e-150 530.0
Bpe12g00626 . 81 441 Sulfurtransferasese/Rhodanese AT1G17850 64.5 2.7e-138 488.8
Bpe04g00562 . 34 229 Sulfurtransferasese/Rhodanese AT2G42220 75.0 9.8e-84 306.6
Bpe04g01274 . 22 221 Sulfurtransferasese/Rhodanese AT3G08920 56.7 2.7e-64 241.9
Bpe07g00865 CCT,ECH 122 332 Sulfurtransferasese/Rhodanese AT4G24750 64.5 5.0e-77 284.6
Bpe08g00293 . 17 295 Sulfurtransferasese/Rhodanese AT5G19370 56.5 6.9e-82 300.8
Bpe09g00160 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 73.3 2.8e-154 541.6
Bpe07g01026 . 37 251 Sulfurtransferasese/Rhodanese AT4G27700 68.8 3.5e-78 288.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011827 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g01026 Bpe_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.96039