Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g01050 AAAATGTCAGCTTCCAAAATCTTTCACTTATCCACTCTACTGTCTCGCACAACCCCGGCCCCTAAACTTCTCTCTCTTCTTCTTCTCTCCAAGCCCTTTCCTTCTCAGTCTCTGAGCTTCAGCCGGTACGGTTCATCCGCTGCCCTTCAGGCTGTCGCCGACGGTAGCCCAGAAGCTCCACCCCACAGCGTCGTCCACCATCCGTGGCCGGAATGGGTGACCTTCGTCGACGGGTTGAAGACCAAGGGTTACTTTATGGAATACCCTCCAAAAGATGGGGACAAAGATGAGGAAGGCGGTGTAGATGCTTCTGACTCAGTCTCTGTTGGTGGTTACAGTGAAATGAATGTCTTGAAGAATGCCTGCTTAAGCTTTGCGCGCGACCGCTATGACATTTTGAAATCATTATCTACAGAAGATATTAAAGTCGTTGTCAAAAGTGGATGTCCTAATCTATATCGAAAAGCTGTCAACTCAGCAAAAAGATTGCGAGCCTATGTGCAACTGGATGAAGGGGATGTTTGCAGTTCGTGCAATCTTCGAGGCTCTTGTGATAAAGCTTACGTGATTTTAAAGGAAACGGAAGCTGCTTCACGAACTGTGGATGTAGTGCGTATATTGTTATTACATGCTCTTGATCCACTGGTTGTTTCTGCAGGAGTGAAACCTCCTGGTAGGGAGTCTATTGGATTGTCTGCAAGGAGACTGCTCTCTCAGTTAACTGAACTGAGTGGAAAATCCCCTGATACGACATTGCGCATACATGATGTTAAACCTCCCAGTAAAAAAGAGAAGTCAAAAAAAGAGAAGTCAAAGAACTTGACAGATGCTGACTTGTTTCAAAATGTTGAGATGAAAAGAGGAGATTGGATGTGCTCCAAGTGTAATTTTCTGAATTTTTCAAAAAATTTGCGGTGCCGAAAATGTAATGAGGATGGCCCCAAACAAACTGTAGCAGACGATGTTGAGATGAAGAGTGGAGATTGGATTTGCTCCGAATGTAATTTCATGAACTTTTCGCGGAACATAAAATGCTTAAAGTGCAAAGGGGATGGGCCGAAAAGGGTGGCTCCCAATGAAGTCGAAATGAAGAAAGGAGATTGGAACTGTGCACAATGTGGGTTCATGAACTTTGCCAGCAATAGAAAGTGCCTGAGGTGCCGAGATGATCGCCCCAAGAGATTGCTTAAACCCGGCGAGTGGGATTGCCCCTCATGTGGTTATTTGAATTACAAAAAGAATATGAGCTGCCTGAAATGCAATGGAGACCGGCCGAAAGTAGAGATAAGTGTGGAAGAAGACGGCCACACGTGGAGGAGACCGTATATACAGCCGTCGAGGAAGACCTCAAAGCAGTAG 1359 45.62 KMSASKIFHLSTLLSRTTPAPKLLSLLLLSKPFPSQSLSFSRYGSSAALQAVADGSPEAPPHSVVHHPWPEWVTFVDGLKTKGYFMEYPPKDGDKDEEGGVDASDSVSVGGYSEMNVLKNACLSFARDRYDILKSLSTEDIKVVVKSGCPNLYRKAVNSAKRLRAYVQLDEGDVCSSCNLRGSCDKAYVILKETEAASRTVDVVRILLLHALDPLVVSAGVKPPGRESIGLSARRLLSQLTELSGKSPDTTLRIHDVKPPSKKEKSKKEKSKNLTDADLFQNVEMKRGDWMCSKCNFLNFSKNLRCRKCNEDGPKQTVADDVEMKSGDWICSECNFMNFSRNIKCLKCKGDGPKRVAPNEVEMKKGDWNCAQCGFMNFASNRKCLRCRDDRPKRLLKPGEWDCPSCGYLNYKKNMSCLKCNGDRPKVEISVEEDGHTWRRPYIQPSRKTSKQ 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15980429 15984319 + Bpe021893.1 Bpe07g01050 106819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g01050 452 SUPERFAMILY Ran binding protein zinc finger-like 393 426 IPR036443 -
Bpe07g01050 452 ProSiteProfiles Zinc finger RanBP2 type profile. 397 426 IPR001876 -
Bpe07g01050 452 PANTHER ASPARAGINE-RICH PROTEIN 36 316 - -
Bpe07g01050 452 PANTHER ASPARAGINE-RICH PROTEIN 350 441 - -
Bpe07g01050 452 SUPERFAMILY Ran binding protein zinc finger-like 359 393 IPR036443 -
Bpe07g01050 452 Pfam Zn-finger in Ran binding protein and others 364 387 IPR001876 -
Bpe07g01050 452 Pfam Zn-finger in Ran binding protein and others 397 425 IPR001876 -
Bpe07g01050 452 Pfam Zn-finger in Ran binding protein and others 325 353 IPR001876 -
Bpe07g01050 452 SMART zf_4 399 423 IPR001876 -
Bpe07g01050 452 SMART zf_4 288 312 IPR001876 -
Bpe07g01050 452 SMART zf_4 327 351 IPR001876 -
Bpe07g01050 452 SMART zf_4 366 390 IPR001876 -
Bpe07g01050 452 SUPERFAMILY Ran binding protein zinc finger-like 321 351 IPR036443 -
Bpe07g01050 452 ProSiteProfiles Zinc finger RanBP2 type profile. 325 354 IPR001876 -
Bpe07g01050 452 MobiDBLite consensus disorder prediction 247 273 - -
Bpe07g01050 452 PANTHER ZINC FINGER PROTEIN 311 355 - -
Bpe07g01050 452 ProSitePatterns Zinc finger RanBP2-type signature. 401 420 IPR001876 -
Bpe07g01050 452 PANTHER ZINC FINGER PROTEIN 350 441 - -
Bpe07g01050 452 ProSiteProfiles Zinc finger RanBP2 type profile. 286 315 IPR001876 -
Bpe07g01050 452 ProSiteProfiles Zinc finger RanBP2 type profile. 364 393 IPR001876 -
Bpe07g01050 452 SUPERFAMILY Ran binding protein zinc finger-like 282 314 IPR036443 -
Bpe07g01050 452 MobiDBLite consensus disorder prediction 249 273 - -
Bpe07g01050 452 ProSitePatterns Zinc finger RanBP2-type signature. 368 387 IPR001876 -
Bpe07g01050 452 Gene3D - 280 316 - -
Bpe07g01050 452 Gene3D - 356 394 - -
Bpe07g01050 452 Gene3D - 317 354 - -
Bpe07g01050 452 Gene3D - 395 427 - -
Bpe07g01050 452 PANTHER ZINC FINGER PROTEIN 36 316 - -
Bpe07g01050 452 PANTHER ASPARAGINE-RICH PROTEIN 311 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g01050 - - - jre:109020065 537.724
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g01050 Bpe-Chr7:15980429 Bpe13g01010 Bpe-Chr13:15855795 1.52E-32 dispersed
Bpe07g01050 Bpe-Chr7:15980429 Bpe13g01065 Bpe-Chr13:16259304 3.55E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g01050 Bpe_Chr07 FPKM 17.861025 19.161922 16.968416 16.639637 111.009811 97.434158 107.609688 4.329506 4.48311 5.110664