Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g01051 ATGAACCTTCGTTATCGAGCTCACAACCTTTACTTCTTCATCTCGCTATTCTCCTTCCTCCTACTATCTCGATGTGCTGTTCCTTACGTCCTTTACATCTCCCTAGATGAGCTCAAAGACTCTCCTGCCTCCGACGACTCTTCAGCCGTCTCTCAACAAGACTCGTCGGAATGGGACGAATTCGGTGATTTTGAAACCTATAGGTCCGACGAGGAGCTCGACCCAGGCTCATGGCGACCGATCTTCGAGCCTGACTCACCCGTCTCTGATATTGATTCTCAGAAGGAGATGTATTATGATGCTGTGGAGAAGATTGTATCGGCCACGAGCTCTGGAGATTTGAGATTGATTGACGAGGCAGCGGTGATGTATGAAAAAGCAGTTAAACTTTATGCTGAGTTAGCAGAAGTTGCGATAAATAGTTTTTTAATCTCCAAGGATTCTCCGGTGATTGAACCTGTAAGGATCCATTATGGAGCTGAGGAGAACAAGGAGGCCTTAAGGAAGTCAAGAGGAGAGGAAGATGAAGACTTCCAGATATTGGAATATCAGGCTCAGAAAGGTAATGCTGCAGCTATGTACAGAGTTGGACTGTTTTACTACTTTGGATTGAGGGGGATGAGACGTGATCATGCCAAAGCACTGTTCTGGTTTTCAAAGGCTGTGGAAAGGGGCGAGCAAAGATCTATGGAACTTCTTGGAGAAATTTATGCTCGGGGAGCTGGGGTAGAAAGAAATTACACTAAAGCACTCAAGTGGCTAAAGCATGCATCCGAACAACCAATTTATCCTGCATATAACGGACTAGGATACTTATATGCTAAAGAGTACTTTGAAAAAGCTGTTGGCAATGATGAAGCTGGTGGACACTACAACCTTGGAGTAATGTATCTAAAAGGCATTGGAGTGAAGAGAGATTTGAAGCTAGCTTCTTCACATTTTATTTTTGCTGCTAATAATGGACAACCCAAGGGATTCTACCAGCTTGCAAAGATGTTCCATACCGGTGTAGGGCTTAAAAAGAATTTGCAAATGGCTACTGCGCTGTACAAATTAGTTGCTGAACGGGGGCCATGGAGTTCATTGTCTAGATGGGCTTTGGAGTCATACTTGAAAGGAAATGTTGGCAAGGCATTCCTTTTGTACTCAAGAATGGCTGAGCTCGGATACGAGGTAGCACAAAGTAATGCTGCATGGATTCTAGACAAATATGGGGAACAGAGTATGTGCATTGGACAGTCTGGATTTTGTACACATGCAGAGAGGCATCAGCGTGCACATTCTATGTGGTGGCAGGCTTCTGAGCAAGGAAATGAGCATGCTGCATTACTAATTGGTGATGCTTACTACTATGGCCGAGGCACTGAAAGGGATTTCGATAGAGCAGCTGAGGCTTACATGCATGCCAAATCGCAATCAAATGCCCAGGCTATGTTTAATCTTGGTTATATGCATGAACATGGCCAAGGACTTCCTTTTGATCTTCATCTTGCTAAGCGATATTATGATCAAGCCCTGGCGAGTGACCCTGTGGCAAACTTGCCCTATGTTGCTTTCATAAACTGGATACAGGTACATTTGATTGATTCACTGCCTGGATTCTACCCAAAAGTGGAAGCATGGGTTGAGAACGTGCTGATGGAGGAGGGCAATGCCACAATTCTCACTCTCTTTGTCTGTCTTCTTACTGTATTATATTTAAGAGAGCGGCAACGAAGGCATGTCGTAGCAGCTGGTGGTGATGGGGCAATACCACACCAGCCAAATGAAGGTATGGTTGGAGTACCTAATCGATGA 1797 44.69 MNLRYRAHNLYFFISLFSFLLLSRCAVPYVLYISLDELKDSPASDDSSAVSQQDSSEWDEFGDFETYRSDEELDPGSWRPIFEPDSPVSDIDSQKEMYYDAVEKIVSATSSGDLRLIDEAAVMYEKAVKLYAELAEVAINSFLISKDSPVIEPVRIHYGAEENKEALRKSRGEEDEDFQILEYQAQKGNAAAMYRVGLFYYFGLRGMRRDHAKALFWFSKAVERGEQRSMELLGEIYARGAGVERNYTKALKWLKHASEQPIYPAYNGLGYLYAKEYFEKAVGNDEAGGHYNLGVMYLKGIGVKRDLKLASSHFIFAANNGQPKGFYQLAKMFHTGVGLKKNLQMATALYKLVAERGPWSSLSRWALESYLKGNVGKAFLLYSRMAELGYEVAQSNAAWILDKYGEQSMCIGQSGFCTHAERHQRAHSMWWQASEQGNEHAALLIGDAYYYGRGTERDFDRAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDQALASDPVANLPYVAFINWIQVHLIDSLPGFYPKVEAWVENVLMEEGNATILTLFVCLLTVLYLRERQRRHVVAAGGDGAIPHQPNEGMVGVPNR 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15985191 15989070 - Bpe021894.1 Bpe07g01051 106820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g01051 598 SUPERFAMILY HCP-like 370 511 - -
Bpe07g01051 598 SUPERFAMILY HCP-like 274 398 - -
Bpe07g01051 598 Gene3D Tetratricopeptide repeat domain 88 274 IPR011990 GO:0005515
Bpe07g01051 598 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 8 121 - -
Bpe07g01051 598 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 123 578 - -
Bpe07g01051 598 Pfam Sel1 repeat 475 507 IPR006597 -
Bpe07g01051 598 Pfam Sel1 repeat 290 321 IPR006597 -
Bpe07g01051 598 Pfam Sel1 repeat 229 260 IPR006597 -
Bpe07g01051 598 Pfam Sel1 repeat 190 225 IPR006597 -
Bpe07g01051 598 Pfam Sel1 repeat 327 357 IPR006597 -
Bpe07g01051 598 Pfam Sel1 repeat 372 390 IPR006597 -
Bpe07g01051 598 Pfam Sel1 repeat 441 463 IPR006597 -
Bpe07g01051 598 Gene3D Tetratricopeptide repeat domain 368 524 IPR011990 GO:0005515
Bpe07g01051 598 SUPERFAMILY HCP-like 171 275 - -
Bpe07g01051 598 SMART sel1 323 358 IPR006597 -
Bpe07g01051 598 SMART sel1 475 510 IPR006597 -
Bpe07g01051 598 SMART sel1 190 226 IPR006597 -
Bpe07g01051 598 SMART sel1 439 474 IPR006597 -
Bpe07g01051 598 SMART sel1 287 322 IPR006597 -
Bpe07g01051 598 SMART sel1 227 262 IPR006597 -
Bpe07g01051 598 Gene3D Tetratricopeptide repeat domain 275 367 IPR011990 GO:0005515
Bpe07g01051 598 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 8 121 IPR044623 GO:0030433
Bpe07g01051 598 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 123 578 IPR044623 GO:0030433
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g01051 K14026 SEL1, SEL1L; SEL1 protein - rcu:8283119 848.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g193 . . Bda06g00823 . . . . Bma12g01247 Cmo13g01021 Cmo18g00058 . . . . . Cpe20g00156 . . . . . . . . . . . . . . . . . . Cone19ag0338 Lsi02g00238 Csa01g00719 Chy12g01393 Cme12g01827 . Blo15g00056 . . Bpe07g01051 . . . Sed08g2761 . . Cma13g00986 Cma18g00076 Car13g00822 Car18g00067 Cpe09g01111 . Bhi08g01299 Tan05g2186 Cmetu12g0492 . Hepe07g2351 . . Cla04g01042 Cam04g1087 Cec01g1600 Cco01g1648 Clacu04g1113 Cmu04g1096 Cre01g1395 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006564 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g01051 Bpe_Chr07 FPKM 206.025269 211.467682 190.01033 192.411209 53.441105 52.439037 47.133106 225.772217 252.263443 227.960297