Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g01055 ATGGCAAGTGGTCCTGGACTGGAGTCTCTTGTTGATCAAACAATTTCAGTCATTACAAACGATGGACGAAATATAGTGGGTATTTTGAAAGGGTTTGACCAAGCTACAAATATCATCCTTGATGAATCCCACGAACGAGTGTACTCGACCAAGGAAGGTGTTCAGCAACTTGTGTTGGGTCTGTACATAATAAGGGGTGACAACATAAGTATTGTTGGAGAGCTTGATGAAGAGCTTGATTCTAGTCTTGACTTGTCAAAATTGAGGGCTCATCCCCTCAAGCCTGTGATTCACTGA 297 42.42 MASGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSSLDLSKLRAHPLKPVIH 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16035269 16036042 - Bpe021898.1 Bpe07g01055 106824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g01055 98 SUPERFAMILY Sm-like ribonucleoproteins 7 81 IPR010920 -
Bpe07g01055 98 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8 5 98 - -
Bpe07g01055 98 PANTHER LSM1 5 98 IPR044642 -
Bpe07g01055 98 Pfam LSM domain 7 73 IPR001163 -
Bpe07g01055 98 SMART Sm3 5 74 IPR001163 -
Bpe07g01055 98 CDD LSm8 5 94 IPR034103 GO:0000398|GO:0005688|GO:0046540
Bpe07g01055 98 Gene3D - 6 97 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe07g01055 Bpe12g00621 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g01055 Bpe-Chr7:16035269 Bpe10g00559 Bpe-Chr10:12603261 9.05E-06 dispersed
Bpe10g00707 Bpe-Chr10:13488283 Bpe07g01055 Bpe-Chr7:16035269 1.25E-09 transposed
Bpe12g00621 Bpe-Chr12:11882917 Bpe07g01055 Bpe-Chr7:16035269 2.80E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g01055 K12627 - ming:122074056 176.407