Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g01067 ATGTCTTCGCCCAGCCGTAGCTCTGGTGGCAGCGTTGGAGGGGCTACCGGCGCCGATCCCCAGCTTTACTTCTGCTACGAGTGCAACCGAACGGTTTCCATTTTTCAATCCTCTTCCTCTGATCTTTGCTGTCCCAATTGCAACGGTGGCTTCATCGAAGAATTAGAAACCCCTAGCCATAACCCTAGCCCTAATCCCTTTCCCTTCTCTTTCTCCTTTAACGCCGATTCTTTCTCGGATTTTGGTTCAGCCGGTGGCGCTTCCGATGATTTTCCGTTTGTTTTCTCGACTACAGCCTCCTCCGGCGGCGGCGACGGTGGCACCGTTATAAACGATCTTTCTGAGCTCTTTGGCGCCGGTCCTACTCGGCTGCAGGATCCTGAGGGCTTCAATCCTTTGTTGTTCCTTCAGAATTATCTTCAAAATGCTAATGTCCAATTAGTGATCCAGAATGTCTCGGGGGAGGCTTTTCACCCCCATGCGAATCTCAATCTCGGAGACTACTTCTTCCGGCCTGGTCTTGAGCAATTAATTCAGCAGCTGGCAGAGAACGATCCTAATAGGTATGGCACGCCTCCGGCCTCTAAATCAGCAGTGGAGGGGCTTCCTGATGTTAAAATTACCAAAGAAATATTGACATCGGATTCATCCCAGTGTGCTGTTTGTATTGATTTGTTTGAACTGGGCGAGGAGGCTAAACAGTTACCCTGCAAACATATATATCATTCAAATTGTATCCTGCCTTGGTTGGAAATGCATAATACTTGCCCCGTGTGTCGGCACGAGTTACCCACTGATGACCCTGATTATGAGCAAAGGGTCCACGGAAATTCTGCTCCTGCCACTGAAAGGCATAGTCAAAATAGTGCTATCGGTGGAAGTATTCAAGGTAGAGCTTTTGGAAGCGAGGCAAATTCAGGAGAAATTTCTGATTCACAGCCGCAACTCGCTGGTGATCGCATGTTTAGCAGGATTTCCTTACCTTGGCCGTTTAGAGTATTTGGTTCACCTGCTGAGACTAGTAATAGCAGGAGAGGCAACAATGATGAATCAAATTCAGGCAACAGAGAAAATCAAAATACCCAATCAGAGCCTAGGCAGGAGGACCTTGATTAA 1116 47.94 MSSPSRSSGGSVGGATGADPQLYFCYECNRTVSIFQSSSSDLCCPNCNGGFIEELETPSHNPSPNPFPFSFSFNADSFSDFGSAGGASDDFPFVFSTTASSGGGDGGTVINDLSELFGAGPTRLQDPEGFNPLLFLQNYLQNANVQLVIQNVSGEAFHPHANLNLGDYFFRPGLEQLIQQLAENDPNRYGTPPASKSAVEGLPDVKITKEILTSDSSQCAVCIDLFELGEEAKQLPCKHIYHSNCILPWLEMHNTCPVCRHELPTDDPDYEQRVHGNSAPATERHSQNSAIGGSIQGRAFGSEANSGEISDSQPQLAGDRMFSRISLPWPFRVFGSPAETSNSRRGNNDESNSGNRENQNTQSEPRQEDLD 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16085681 16086796 + Bpe021910.1 Bpe07g01067 106836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g01067 371 MobiDBLite consensus disorder prediction 336 361 - -
Bpe07g01067 371 Pfam zinc-ribbon 21 55 IPR039525 GO:0061630
Bpe07g01067 371 MobiDBLite consensus disorder prediction 333 371 - -
Bpe07g01067 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 266 IPR013083 -
Bpe07g01067 371 ProSiteProfiles Zinc finger RING-type profile. 219 260 IPR001841 -
Bpe07g01067 371 MobiDBLite consensus disorder prediction 279 315 - -
Bpe07g01067 371 SMART ring_2 219 259 IPR001841 -
Bpe07g01067 371 CDD RING-H2_RNF126_like 218 260 - -
Bpe07g01067 371 MobiDBLite consensus disorder prediction 270 315 - -
Bpe07g01067 371 Pfam Ring finger domain 218 260 IPR001841 -
Bpe07g01067 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 13 340 - -
Bpe07g01067 371 SUPERFAMILY RING/U-box 205 267 - -
Bpe07g01067 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 13 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g01067 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101205252 436.417
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g01067 Bpe12g00632 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00494 Bpe-Chr4:3115841 Bpe07g01067 Bpe-Chr7:16085681 3.38E-44 dispersed
Bpe04g01831 Bpe-Chr4:23613033 Bpe07g01067 Bpe-Chr7:16085681 3.32E-33 dispersed
Bpe07g01067 Bpe-Chr7:16085681 Bpe12g00632 Bpe-Chr12:11960303 0 dispersed
Bpe11g00036 Bpe-Chr11:262667 Bpe07g01067 Bpe-Chr7:16085681 8.80E-32 dispersed
Bpe15g00674 Bpe-Chr15:17398675 Bpe07g01067 Bpe-Chr7:16085681 1.36E-13 dispersed
Bpe02g01571 Bpe-Chr2:18689632 Bpe07g01067 Bpe-Chr7:16085681 2.40E-25 transposed
Bpe05g00230 Bpe-Chr5:14517247 Bpe07g01067 Bpe-Chr7:16085681 1.01E-10 transposed
Bpe12g00229 Bpe-Chr12:1934786 Bpe07g01067 Bpe-Chr7:16085681 3.12E-10 transposed
Bpe14g00415 Bpe-Chr14:3844013 Bpe07g01067 Bpe-Chr7:16085681 4.85E-12 transposed
Bpe12g00631 Bpe-Chr12:11956125 Bpe07g01067 Bpe-Chr7:16085681 3.93E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g964 . . . . Bpe12g00632 . . Bma12g01260 Cmo13g00999 . . . . . . Cpe20g00175 . . . . . . . . . . . . . . . . . . . . Csa01g00747 Chy12g01365 Cme12g01797 Blo13g00102 . . . Bpe07g01067 . . . . . . Cma13g00964 . . Car18g00086 Cpe09g01094 . Bhi08g01341 Tan05g2147 . Lac10g0321 . . . Cla01g01465 Cam01g1533 Cec01g1573 Cco01g1620 Clacu01g1557 Cmu01g1447 Cre01g1369 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004117 1 3 3 1 3 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 0 1 5 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g01067 Bpe_Chr07 FPKM 29.118696 33.082661 7.174418 6.872926 18.360821 21.994898 20.430685 0.28704 0.0 0.224349