Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g01085 TCCGCTATGGGATCGCAGGTTGATGAAGAAACCGCCTGGCAGCAGGCTCTGAGGAGGATGTTGCCCGTCGGGGCTCCATTGCCTGACGACGACCATCTTGATTACTCTATTGCCGTCGAATACCATGGACCTCCCGTGCCTTACGACCTCCCTAAGGTTGATCCACTTCATATTGCTTCAGTTTCTTTAACTTCTCCTTCTATGGTTTCGCCCCTGGACTTAACTTCGATTCCCATCGTTTTTCCCATCGCTCCTCGGGTTTCGAGGTTTGGCCCTATTAGGAATGGACTCGTCTCCAGTGATCCTCGTAGTCCGGTGGAGAGTCAGAGATCGTCTTCGGTTTCCGGACCTCCCTTGGAATCGCAGAATGGGGAGGATTTAAATTTCGGAAATGAAAGCGTGGAGGAAACTTTCAGCTCCGAGTATTCCGGCCAACGTTTCTATTCTGCCAGAAATACGTCTGTCACTGATGGGAAGCGGTCAAACATTGTTACCTTTGCTACACCCAGAGAATCCGAAGACGATGAAGAAGACGCGCTTTCCTCACCCAGGTCAACTGCTACTAATGCCATGACATCAACAGTGGTGGATCCAAGTGGAGAAATCGGACCGAGAAAGAAAGGGATTTGTATTCGATGCGGGAGAGGGAATTGGTTGAAAGATAGGGAAGCTTGTCTGGTGTGTGACGCCAGATATTGCAGTAATTGTTTGCTTAAGGCGATGGGGTCAATGCCAGAAGGACGGAAGTGCGTTGGTTGTATTGGGATGCCGATAAACGAGTTGAAAAGGCCTCTGTTGGGGAAGTGTTCTAGAATGCTGTCAAGGGTGTATATCCCGTTGGAAGTTAAACAAATAATGAAAGCAGAGAAAGAGTGTGCGGCAAATCAGCTTCGACCTGAGCAGCTGATTGTAAATGGTAGGCAGTTGAGGCAGGATGAATTGACGGACATTTTGGGGAGTGCCAACCCTCCGCAGAAGTTAAAACCAGGGAGATATTGGTATGATAAGGATTCGGGACTTTGGGGACAGGAGGGAGGAAAACCTGATAGAATTATAAGTGCAAAGCTGAATGTTGGAGGTAAACTTCAACCAGATGCAAGTAATGGGAACACTAAAGTTTTCATAAATGGCCGTGAAATCACGAAGGTTGAGCTCAGAGTGTTAAGGTTGGCCAATGTGCAGTGCCCCCGAGATACTCATTTTTGGGTATATGATGATGGATCTTATGAGGAAGAAGGTCAAAATAACATTAAAGGGAATATATGGGGAAAGGCGTCTACTCGAATTTTATGTTCATTGCTATCACTGCCTGTACCACCTAGTACTTCAAATGGGACAAAAGATGATCCAGCTAGTTTTTCAGGCAGACCACTACTTGAATACATGGATAATGGTAAACCTCATCAACTTCTCTTGTTTGGGTTGGAAGGATCTGGAACCAGCACTTTATTCAAGCAGGGCAAGTTTTTATATGGAAACAAGTTCACTTCAGAAGAGCTACAGAACATGAAGCTTATGATCCAAAGCAACCTGTACAAGTATCTTAGCATTCTGCTTGAGGGTCGAGAGCGTTTTGAAGAAGAAGCTATGATTGAAAACGAACATACTTCTTTAGATTCAGAAACATCTGTCCCAGGTGAAACAGGAACTAATGGAAGTAACCTTTGTAAATATTCAATCAACCCAAGATTCAAGCATTTTTCTGATTGGTTGCTGGACATAATGGCTAGTGGTGACTTGGATGCTTTCTTCCCAGCTGCAACACGTGAATATGCTCCAATTGTAGATGAAGTGTGGAAGGATGCGTCCCTTCAAGAAACATACAAGAGAAGGAAGGAACTACATGGCCTCTCTGATGTTGCAAAGTATTTCTTAGACCGGACAATAGAAATATCAAGCAACGAATATGAACCTTCTGAGAAGGACATTTTATATGCTGAGAGAGTTACCCAGAGAAATGGTATTGCCTTCATGGATTTCTCTTTTGATGATAGGAGCCCCATGTCTGAGCTATACAGCGAAAATATGGAACGCCCAACTCCATCCAGAAAGTACCAACTAATTCGCATTAATTCTAAGGGACCACATGATGGTTGTAAATGGCTTGAAATGTTTGAAGATGTGAGAGCAGTGATATTTTGTGCTTCCTTGAGCGACTACGACCAGATTTGGTGCGACGGCCTGGGTTCTCCTTGCAATAAAATGCTGGCAAGCAGGAAATTGTTTGAGAGTTTAGTTAGGCATCCTTGTTTTAGAGACGTTCCTTTTATGCTCATATTGAACAAATATGATACTTTTGAGGACAAGATAAGTGAAGCTCCATTGTCAACTTGTGAGTGGTTTAAGGATTTCAGCCCTTTGAAGCCCCACAACAATAATCAGGCCCTGGCTCACCACGCCTACTACTATGTCGCAGTGAAATTCAAGGAGCTCTACTATTCCATCACCGGCCAAAAGTTGTTTGTTTGTCAAACACGAGCTCTGGAACGTAACACAGTTGATGAAGCGTTTAAATATATTAGGGAGGTTCTCAAATGGGAAGAGGAGAAAGAAGAAAATATTTACGGAAATGTGGCTGACGATTCATTTTACAGTACAGACATGAGCTATTCTCCACATATCAGGGAGGAATGA 2634 44.04 SAMGSQVDEETAWQQALRRMLPVGAPLPDDDHLDYSIAVEYHGPPVPYDLPKVDPLHIASVSLTSPSMVSPLDLTSIPIVFPIAPRVSRFGPIRNGLVSSDPRSPVESQRSSSVSGPPLESQNGEDLNFGNESVEETFSSEYSGQRFYSARNTSVTDGKRSNIVTFATPRESEDDEEDALSSPRSTATNAMTSTVVDPSGEIGPRKKGICIRCGRGNWLKDREACLVCDARYCSNCLLKAMGSMPEGRKCVGCIGMPINELKRPLLGKCSRMLSRVYIPLEVKQIMKAEKECAANQLRPEQLIVNGRQLRQDELTDILGSANPPQKLKPGRYWYDKDSGLWGQEGGKPDRIISAKLNVGGKLQPDASNGNTKVFINGREITKVELRVLRLANVQCPRDTHFWVYDDGSYEEEGQNNIKGNIWGKASTRILCSLLSLPVPPSTSNGTKDDPASFSGRPLLEYMDNGKPHQLLLFGLEGSGTSTLFKQGKFLYGNKFTSEELQNMKLMIQSNLYKYLSILLEGRERFEEEAMIENEHTSLDSETSVPGETGTNGSNLCKYSINPRFKHFSDWLLDIMASGDLDAFFPAATREYAPIVDEVWKDASLQETYKRRKELHGLSDVAKYFLDRTIEISSNEYEPSEKDILYAERVTQRNGIAFMDFSFDDRSPMSELYSENMERPTPSRKYQLIRINSKGPHDGCKWLEMFEDVRAVIFCASLSDYDQIWCDGLGSPCNKMLASRKLFESLVRHPCFRDVPFMLILNKYDTFEDKISEAPLSTCEWFKDFSPLKPHNNNQALAHHAYYYVAVKFKELYYSITGQKLFVCQTRALERNTVDEAFKYIREVLKWEEEKEENIYGNVADDSFYSTDMSYSPHIREE 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16203304 16215260 + Bpe021925.1 Bpe07g01085 106854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g01085 877 Pfam G-protein alpha subunit 466 843 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g01085 877 SUPERFAMILY Transducin (alpha subunit), insertion domain 495 646 IPR011025 GO:0007165
Bpe07g01085 877 Gene3D - 664 854 IPR027417 -
Bpe07g01085 877 CDD G-alpha 468 847 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g01085 877 Gene3D - 497 648 IPR011025 GO:0007165
Bpe07g01085 877 MobiDBLite consensus disorder prediction 160 189 - -
Bpe07g01085 877 ProSiteProfiles G-alpha domain profile. 466 855 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g01085 877 MobiDBLite consensus disorder prediction 97 129 - -
Bpe07g01085 877 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 20 872 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g01085 877 SUPERFAMILY FYVE/PHD zinc finger 190 253 IPR011011 -
Bpe07g01085 877 SMART galpha_1 447 838 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g01085 877 MobiDBLite consensus disorder prediction 101 129 - -
Bpe07g01085 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 847 IPR027417 -
Bpe07g01085 877 PRINTS Alpha G protein (transducin) signature 636 658 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g01085 877 PRINTS Alpha G protein (transducin) signature 708 736 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g01085 877 PRINTS Alpha G protein (transducin) signature 469 484 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g01085 877 PRINTS Alpha G protein (transducin) signature 756 765 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe07g01085 877 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3-LIKE 20 872 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g01085 - - - mcha:111008609 1236.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00106 Bpe-Chr4:741475 Bpe07g01085 Bpe-Chr7:16203304 1.69E-48 dispersed
Bpe06g00234 Bpe-Chr6:12483384 Bpe07g01085 Bpe-Chr7:16203304 0 dispersed
Bpe07g00239 Bpe-Chr7:1694809 Bpe07g01085 Bpe-Chr7:16203304 0 dispersed
Bpe07g01085 Bpe-Chr7:16203304 Bpe14g00955 Bpe-Chr14:7081961 1.39E-07 dispersed
Bpe07g01085 Bpe-Chr7:16203304 Bpe07g00403 Bpe-Chr7:3848109 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g922 . Blo16g00262 . . . . . Bma12g01280 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0314 Lsi02g00010 . . Cme12g02053 . . . . Bpe07g01085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g01085 Bpe_Chr07 FPKM 0.518072 0.063074 0.185135 0.0 37.102486 25.191248 28.84552 0.0 0.0 0.122075