Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g01087 ATGTGGATAGAAAACATGGTCTCTTTGGTTTCAGCTCGAACGGGGAGGCACCGCCAGCGATACAATAAAGGATGTCGTCTGGTTGTCGGATGCATTCCTTACAGATATAGGGACGCTAAGCAATCGTTTTCCGTCGATAATATGGAGGTGCTTGTTATTAGTTCTCAAAAGGGTCAAGCAATGCTATTTCCAAAGGTAAAATTAGGGCCATTGATCTCTGTTTTTCTTTTTCATTTCGTGTTCGGGTTCTCAAATTTTATGTCTTTAATGCAGGGAGGTTGGGAAAATGATGAGTCTATGGAAGCTGCAGCTTCGAGAGAGACTCTGGAAGAAGCTGGTGTGATTGGAAAAATTGAAAGTAGATTGGGAAAGTGGCAGTACAAGAGCAAAAGCCACAACAAAATGCACGAAGGGTACATGTTTTCGTTGCTCGTCAATGAACAATTGAACCATTGGCCCGAGAAAGGCTTCAGAAAACGAGAATGGATAAGTGTAGAAAAAGCTAAAGAAGTTTGCCCGCATTCATGGATGAAAGAAGCTTTAGATGTTCTAGTGAGTGAGCAAATGGAGAAAAAGGAGAATGGATCCAACTCCAAGTGTACATAA 606 41.75 MWIENMVSLVSARTGRHRQRYNKGCRLVVGCIPYRYRDAKQSFSVDNMEVLVISSQKGQAMLFPKVKLGPLISVFLFHFVFGFSNFMSLMQGGWENDESMEAAASRETLEEAGVIGKIESRLGKWQYKSKSHNKMHEGYMFSLLVNEQLNHWPEKGFRKREWISVEKAKEVCPHSWMKEALDVLVSEQMEKKENGSNSKCT 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16234319 16235150 - Bpe021927.1 Bpe07g01087 106856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g01087 201 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 86 193 - -
Bpe07g01087 201 ProSitePatterns Nudix box signature. 92 113 IPR020084 GO:0016787
Bpe07g01087 201 PANTHER NUDIX HYDROLASE 4-LIKE 86 193 - -
Bpe07g01087 201 PANTHER NUDIX HYDROLASE 4-LIKE 3 65 - -
Bpe07g01087 201 Pfam NUDIX domain 87 170 IPR000086 -
Bpe07g01087 201 CDD Nudix_Hydrolase_9 27 178 - -
Bpe07g01087 201 ProSiteProfiles Nudix hydrolase domain profile. 24 185 IPR000086 -
Bpe07g01087 201 SUPERFAMILY Nudix 83 187 IPR015797 -
Bpe07g01087 201 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 10 187 - -
Bpe07g01087 201 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 3 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g01087 K07766 E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] - zju:107435126 215.698
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g01087 Bpe12g00679 CCT
Bpe07g01087 Bpe12g00647 CCT
Bpe07g01087 Bpe12g00679 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g01087 Bpe-Chr7:16234319 Bpe14g00072 Bpe-Chr14:1163740 4.60E-61 dispersed
Bpe12g00647 Bpe-Chr12:12128919 Bpe07g01087 Bpe-Chr7:16234319 2.38E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g175 . . . Bda15g00560 Bpe12g00647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00124 Blo15g00019 . . Bpe07g01087 . . Bma08g00106 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g872 . . . . Bpe12g00679 . . Bma12g01282 . . Cma10g00080 Cma11g00058 Car10g00071 Car11g00052 Sed08g0062 . . Bhi02g00575 Tan09g2328 Cmetu02g1969 . Hepe09g0082 . . . . . . . . . . Cone16ag0060 . . . . . . Blo13g00157 . . . Bpe07g01087 . . . . Cmo10g00080 Cmo11g00060 . . . . . Cpe18g00881 . . . . . . . . . . . . . . . Csa01g00088 Chy02g02632 Cme02g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014882 1 0 2 1 2 0 2 0 0 0 0 0 2 0 0 1 0 2 2 0 0 1 0 0 0 0 0 1 0 0 17
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g01087 Bpe_Chr07 FPKM 23.707199 22.205008 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0