Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00001 ATGTTTCAGCCAAACATATTTGGAAGTCACCCTCACATGTTGGACATGACACACAAAACCTCCGGAAGGGAAATGGCAATCGTTGGGGATGATGATTTTGAGACTAAATCAGGTGCTGAAATCATGGAAGCTGCTTCAGGAGACGAACAAGATCCTGATCAACCTCCCAGAAAGAAGCGTTACAATCGTCATACCCAACATCAAATTCAGGAAATGGAAGCCTTTTTCGAGAAATGCCCTCACCCTGATGAGAAGAAAAGAAAGGAGTTGGGTCGTCAGCTCGGTCTGAAACCTTTGCAGGTCAAATTTTGGTTCCAGAATAAGCGCACCCAGATGAAGGCCCAACATGAACGCCATGAGAACGCTATTTTGAAAGCCGAGAATGAAAAGTTTCGCGCCGAGAACAAAAGGTACATGGACGCTTTCAGCAATGCCTCATGCCCCAACTGCGGAGGCCCGGCTGCTATGGGTGAGATGTCGTTTGACGACCATCATTTAAGGATTGAAAATGTCCGACTACGAGAAGAGGTTGATGGAATGGCTCCTAAATACGTAGACAGACCTTTTGCCTCGTATAACCACAGCCAATCTGACGTTGGAGTTGGTGGTTTTGGTGGGAATTCAGGCTACGTGTACGGAGCAAACGAACTTGTCATGCCGATGTCCAGGCCTACGGAGGCTGATAAACCAGTGATCGTCGAGCTTGCTGTTGCAGCTATGGAAGAGCTACTCAGCATGGCTGAAAAGGGACAGCCTTTGTGGATGCCAGCCGGTGATAATGCCTCCGAGATACTGAATGAAGAAGAATATCTCAAGCTTTTCCCAAGAGAAATTTGCTCAAAACCTTTGGTCTTAAGAACCGAAGCTTCACGGCAATCCGCAGTCGTCATCATGAACCACATTAAGCTCATTGAGATTTTCATGGACGTGAATAAATGGTCAACTGTATTTTGTGGTATTGTTTCAAGAGCACTTCTTCTGGAAGTCCTATCAACTGGAGTTGCTGGAAACCGAAATGGAGCATTGCAAGTGATCACAGCTGAATTCCAGGTCCCCACGCCACTAGTTCCGACCAGGGAAAATTACATGGTCAGGTACTGCAAGAAGCATGGAGATGGGACTTGGGCTATCGTCGACGTTTCTCTCGATACTTTACGCCCAACCTCTATGCCAAAGATCAGTCGAAGAAGACCATCTGGATGCTTGATCCAAGAACTTCCAAATGGCTTCTCCAAGGTGACGTGGGTCGAACACGTAGAAGAAGATATCAGAGCCGTTCATAATCTCTACCAATCACTTGTTAGTTCTGGGCTGGCTTTTGGAGCCACACGATGGGTGGCTACGTTAGATCGACAGTGCGAACGTCTCGCAAGCTCCATGGCCAACGACATCGCTGCTGGAGATTTACGCATATTGACAAACCCAGAAGGGAGGAAGAGCATGGTGAAGCTGGCAGAGAGAATGGTGATGACCTTTTGCAGTGGGGTGGGTGCTTCAACAGCACACGCATGGACAACGTTGCCTACGATTGGCTCGGACGATGTTAGAGTCATGTCTAGAAAGAGCACGGATGTTTCAGGAAGGCCTCTCGGCATTGTTCTAAGCGCTGTCACTTCCTTCTGGATGCCAGTTCCACCTCAAAGAGTTTTCGATTTCCTTCGAAATTATAATTCAAGAAACCAGTGGGATATTCTATCCAACGGGGGCCTAGTTCAAGAAATGGCATACATTTCCAATGGTCGTCACGCCGGAAACTGCGTCTCCCTACTGCGAGTCAACAGCGCAAACTCAAGCCAGAGCAACATGCTGATTTTACAAGAAAGTTGCACGGATTCAACAGGGTGTTACGTCATTTATGCCCCTGTTGATATTGCAGCCATGAATGTGGTCTTAAATGGAGGCGACCCAGATTACTCGGCGCTTCTTCCTTCTGGATTTGCCATTCTTCCTGACGGGCCTGGACGTGCCGGAGATGGTGTTATTGAGGTTGGGTCCGGTGGCTCTTTGCTGACAGTGGCATTTCAAATCTTGGTCGATTCCGTCCCAACGTCCAAGATTTCGCTGGGATCGATTGCTACTGTAAACAGCCTTATTAAATGCACTGTTCAAAGGATCAGAGCTGCCGTCACATGCGAGAATCCATGA 2145 47.83 MFQPNIFGSHPHMLDMTHKTSGREMAIVGDDDFETKSGAEIMEAASGDEQDPDQPPRKKRYNRHTQHQIQEMEAFFEKCPHPDEKKRKELGRQLGLKPLQVKFWFQNKRTQMKAQHERHENAILKAENEKFRAENKRYMDAFSNASCPNCGGPAAMGEMSFDDHHLRIENVRLREEVDGMAPKYVDRPFASYNHSQSDVGVGGFGGNSGYVYGANELVMPMSRPTEADKPVIVELAVAAMEELLSMAEKGQPLWMPAGDNASEILNEEEYLKLFPREICSKPLVLRTEASRQSAVVIMNHIKLIEIFMDVNKWSTVFCGIVSRALLLEVLSTGVAGNRNGALQVITAEFQVPTPLVPTRENYMVRYCKKHGDGTWAIVDVSLDTLRPTSMPKISRRRPSGCLIQELPNGFSKVTWVEHVEEDIRAVHNLYQSLVSSGLAFGATRWVATLDRQCERLASSMANDIAAGDLRILTNPEGRKSMVKLAERMVMTFCSGVGASTAHAWTTLPTIGSDDVRVMSRKSTDVSGRPLGIVLSAVTSFWMPVPPQRVFDFLRNYNSRNQWDILSNGGLVQEMAYISNGRHAGNCVSLLRVNSANSSQSNMLILQESCTDSTGCYVIYAPVDIAAMNVVLNGGDPDYSALLPSGFAILPDGPGRAGDGVIEVGSGGSLLTVAFQILVDSVPTSKISLGSIATVNSLIKCTVQRIRAAVTCENP 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7286 10266 + Bpe022102.1 Bpe08g00001 106877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00001 714 Gene3D - 239 458 IPR023393 -
Bpe08g00001 714 Coils Coil 109 141 - -
Bpe08g00001 714 MobiDBLite consensus disorder prediction 50 65 - -
Bpe08g00001 714 SUPERFAMILY Bet v1-like 225 457 - -
Bpe08g00001 714 CDD homeodomain 57 116 IPR001356 GO:0003677
Bpe08g00001 714 CDD START_ArGLABRA2_like 229 454 - -
Bpe08g00001 714 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Bpe08g00001 714 SMART START_1 234 455 IPR002913 GO:0008289
Bpe08g00001 714 ProSiteProfiles START domain profile. 225 458 IPR002913 GO:0008289
Bpe08g00001 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN-RELATED 13 711 - -
Bpe08g00001 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 711 IPR042160 -
Bpe08g00001 714 Gene3D - 43 130 - -
Bpe08g00001 714 SMART HOX_1 56 119 IPR001356 GO:0003677
Bpe08g00001 714 Pfam Homeodomain 58 113 IPR001356 GO:0003677
Bpe08g00001 714 SUPERFAMILY Homeodomain-like 47 115 IPR009057 -
Bpe08g00001 714 Pfam START domain 235 455 IPR002913 GO:0008289
Bpe08g00001 714 MobiDBLite consensus disorder prediction 43 65 - -
Bpe08g00001 714 SUPERFAMILY Bet v1-like 474 706 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00606 Bpe-Chr7:12804133 Bpe08g00001 Bpe-Chr8:7286 0 dispersed
Bpe08g00001 Bpe-Chr8:7286 Bpe15g00712 Bpe-Chr15:17670077 0 dispersed
Bpe08g00001 Bpe-Chr8:7286 Bpe14g00705 Bpe-Chr14:5506370 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21694 PF01852 START 3.30E-48 CL0209 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00001 K09338 - tcc:18597106 1089.33