Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00006 ATGGACGTATTAGATCTCCAGTCAAGCGAATCCGACCGAGGATATTGGGATATAAACTGGAGTTTGCCTGGTGGGAAGGACAGATACCAATTACTTAAGGGGCTTGAATATAACGTGGTTCATTCGAGCAATGACCGAATAGAAGTATCATTCCAGACTGTCTATAATCCATCCATGTCAACCAACAAACTGCCACTCAGCGTAGACATAAGATATATTTTGAGGAGTGGTGTTGCAGGCTTCTACAGCTATGCAATTTTCGAGCGCCTGCCTCAATGTCCTGCTTTTGATCTTGCGCAGACCAGAATGGTTTTTAAGCTTCGACAAGAGAAGTTCCATTACATGGCAATTTCAGACGAGAAACAGAGAATAATGCCAGTGCCGGAGGATCTAAGGCCCGATAGAGGAAAACAGCTTATTGTTCCTGAATCAGTACTACTGGTGAATCCCACTAATCCTGATCTTAAAGGAGAGGTTGATGATAAATACCAGTATTCAATGGACAACAAAGACGGAGGAGTTCATGGTTGGATCAGTTCTGACCCGATTATAGGATTTTGGGTCATCTTTCCCAGCCATGAGTTCCGCAACGGTGGTCCAACTAAGCAAAATCTTACAGTGCACACGGGTCCATTATGCCTTGCTATGTTCCACGGCTGTCACTACATTGGAGAAGATATAGTGGCTCATTTTGAGGAGGGAGAGACGTGGAAGAAGGTTTTTGGCCCTATCTTCGTGTACCTTAACTCGACTTCTCATGTATCAGATGCATACAATCTGTGGATAGATGCGAAAAAACAGAGGGTTTCCGAGGAGGCTGCATGGCCCTATGATTTCGTGTCTTCCACATATTATCTTACTGCAAAGGAGCGTGGATCCGCAACAGGGAGACTGTTTGTCCAAGACAGGTATATTTCTGGTTCGCTCATTCCAGCCAAGTATGCATATGTTGGTTTGTCAGCTGCCACAGGTGAAGGAACCTGGCAAACAGAAAGCAAGGATTATCAGTTTTGGATACAAACCGATTCCGACGGAAACTTCACCATCAAGAATGTTGTTCCTGGTGTCTATGGGCTGCACGGTTGGGTACCTGGATTCATCGGCGATTACCTCCAAAAATCTTTTGTAACAATCTCTGCAGCAACACAGATAGAACTTGGCAATTTGATCTACGTTCCAATCAGAGATGGACCTACTTTGTGGGAGATCGGCTTTCCTGATCGTACGGCAATCGGCTTCTACGTTCCCGACGTGAATCCAACGTACGTTAATAAGCTATTTGTCAACAGCCCAGAAAAGTTCAGACAGTATGGATTGTGGGATAGATATACTGATATGTATCCTAAGTACGATCTGGTTTTCACCGTAGGCGTCGACGATCCCAAAAAGGACTGGTTCTTTGCCCAAGTTGACAGGTTTCTTGTTTTAAAAGCAATGTCTATTAGGAGAGGGGAAGCTAACTATCTTCCCTGTACTTGGACCATCAAATTCAACCTCATCTCAGTTTCTCATGGAACCTACAAATTAAGATTGGCGACTGCATCAGTTACCCGCTCGGATCTGCAGATTTACGTGAACGTGATGAACACTGGACACCTGGTTTTCGAGGAGACTAATTTGGGGGCCGACAACGCTGTTTGCCGGCATGGAATTCATGGACTGTATCGGCTTTTCAGCGTCGATATTCCTCGGTTGTTGCTGGTCAACGGAGATAACAGCATTTATCTCACCCAAGCAAGGGGTGGAGATGCACTCTGCGGGATTCTGTACGATTATTTAAGACTCGAAGCTCCTGCCCCCCTCTTAGAAACATGA 1815 45.18 MDVLDLQSSESDRGYWDINWSLPGGKDRYQLLKGLEYNVVHSSNDRIEVSFQTVYNPSMSTNKLPLSVDIRYILRSGVAGFYSYAIFERLPQCPAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPVPEDLRPDRGKQLIVPESVLLVNPTNPDLKGEVDDKYQYSMDNKDGGVHGWISSDPIIGFWVIFPSHEFRNGGPTKQNLTVHTGPLCLAMFHGCHYIGEDIVAHFEEGETWKKVFGPIFVYLNSTSHVSDAYNLWIDAKKQRVSEEAAWPYDFVSSTYYLTAKERGSATGRLFVQDRYISGSLIPAKYAYVGLSAATGEGTWQTESKDYQFWIQTDSDGNFTIKNVVPGVYGLHGWVPGFIGDYLQKSFVTISAATQIELGNLIYVPIRDGPTLWEIGFPDRTAIGFYVPDVNPTYVNKLFVNSPEKFRQYGLWDRYTDMYPKYDLVFTVGVDDPKKDWFFAQVDRFLVLKAMSIRRGEANYLPCTWTIKFNLISVSHGTYKLRLATASVTRSDLQIYVNVMNTGHLVFEETNLGADNAVCRHGIHGLYRLFSVDIPRLLLVNGDNSIYLTQARGGDALCGILYDYLRLEAPAPLLET 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48871 51690 - Bpe022106.2 Bpe08g00006 106882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00006 604 Pfam Rhamnogalacturonate lyase family 6 159 IPR010325 -
Bpe08g00006 604 SUPERFAMILY Starch-binding domain-like 333 385 IPR013784 GO:0030246
Bpe08g00006 604 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 599 - -
Bpe08g00006 604 Pfam Polysaccharide lyase family 4, domain III 399 595 IPR029411 -
Bpe08g00006 604 Gene3D - 286 386 - -
Bpe08g00006 604 Gene3D - 28 258 IPR014718 GO:0030246
Bpe08g00006 604 PANTHER POLYSACCHARIDE LYASE FAMILY 4 PROTEIN 3 599 - -
Bpe08g00006 604 Gene3D - 397 596 - -
Bpe08g00006 604 CDD RGL4_M 290 389 IPR029413 -
Bpe08g00006 604 CDD RGL4_N 3 257 - -
Bpe08g00006 604 CDD RGL4_C 401 596 - -
Bpe08g00006 604 SUPERFAMILY Galactose-binding domain-like 396 596 IPR008979 -
Bpe08g00006 604 Pfam Polysaccharide lyase family 4, domain II 314 385 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00006 Bpe-Chr8:48871 Bpe15g00269 Bpe-Chr15:14078914 0 dispersed
Bpe08g00006 Bpe-Chr8:48871 Bpe14g00479 Bpe-Chr14:4246968 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00006 K18195 - pvy:116120549 979.163