Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00017 ATGGAGGGTGGGGCTAGTGGCGCCACTGGTCTGATGGCGTTTGGAGAAAACAGTAACGGGCTGTGTTCAATGATGACGATGATGCATGGTATGAGCGCCCATCATACTCATCTTAACTCAATCGCGGAGACCAACAGTCCATTTCTTCCGCTGCCTTCTTCGACTACCAACAATCACGACCAAAATCGTAATAGTAGCAGCGGTTCTTTTATAGTCGAGGACCGTCAAAACAACAGCTCTTGGTGTTATTTCATGGACAGCCACAATAATGCTGACAACAACTCGTCTTCTGATGTCAAGGCTAAGATTATGGCTCATCCTCACTATCATCGTCTGTTAGCTGCTTATCTTAATTGTCAAAAGGTAGGGGCTCCGCCGGAAGTGGTGGTTAAGCTAGAGGAAGCTTGTGCTTCAATGGCGTCAATGGGCCACGCTGGTACCGGATGTCTCGGTGAAGATCCAGCGTTAGATCAATTCATGGAAGCCTACTGTGAGATGCTGACCAAATACGAGCAAGAGCTCTCAAAACCCTTCAAGGAAGCCATGCTTTTTCTTCAAAGAATAGAATGCCAGTTCAAGGCTCTCACTGTTTCTTCAGACAATGGTTGGGAGGGAGGTGAAAGGAATGGATCATCAGAAGAAGAAGAAGTGGATGCAAACAACCAGGGCATTGATCCGCAAGCAGAAGACAGGGAGCTCAAGGGTCAGCTTCTGCGCAGGTACAGTGGATATTTAGGAAGCCTGAAGCAGGAGTTCATGAAGAAGCGGAAGAAAGGTAAGCTGCCGAAAGAGGCGAGGCAACAGCTACTGGATTGGTGGAGTAGACATCACAAATGGCCTTACCCTTCGGAGTCGCAGAAGTTGGCTCTTGCGGAGTCGACCGGATTGGATCAGAAGCAGATAAACAACTGGTTTATAAATCAAAGGAAAAGGCATTGGAAGCCTTCGGAAGATATGCAGTTTGTGGTGATGGATGCAGCCCACCCCCATCCACAGTATTTCATGGACAGCGCCTTGGGAAATCCTTTTCCCTTGGACATCACACCAGCCTTGCTCTGA 1059 48.25 MEGGASGATGLMAFGENSNGLCSMMTMMHGMSAHHTHLNSIAETNSPFLPLPSSTTNNHDQNRNSSSGSFIVEDRQNNSSWCYFMDSHNNADNNSSSDVKAKIMAHPHYHRLLAAYLNCQKVGAPPEVVVKLEEACASMASMGHAGTGCLGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRIECQFKALTVSSDNGWEGGERNGSSEEEEVDANNQGIDPQAEDRELKGQLLRRYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHHKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHPQYFMDSALGNPFPLDITPALL 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 128311 130326 - Bpe022118.1 Bpe08g00017 106893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00017 352 MobiDBLite consensus disorder prediction 201 232 - -
Bpe08g00017 352 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 341 - -
Bpe08g00017 352 Pfam ELK domain 232 253 IPR005539 GO:0003677
Bpe08g00017 352 Pfam KNOX1 domain 99 137 IPR005540 GO:0003677|GO:0005634
Bpe08g00017 352 SMART KNOX1_2 97 141 IPR005540 GO:0003677|GO:0005634
Bpe08g00017 352 CDD homeodomain 264 316 IPR001356 GO:0003677
Bpe08g00017 352 SUPERFAMILY Homeodomain-like 254 330 IPR009057 -
Bpe08g00017 352 SMART KNOX2_2 146 197 IPR005541 GO:0003677|GO:0005634
Bpe08g00017 352 SMART ELK_2 232 253 IPR005539 GO:0003677
Bpe08g00017 352 Pfam Homeobox KN domain 272 311 IPR008422 GO:0003677|GO:0006355
Bpe08g00017 352 Gene3D - 250 321 - -
Bpe08g00017 352 ProSiteProfiles ELK domain profile. 232 252 IPR005539 GO:0003677
Bpe08g00017 352 MobiDBLite consensus disorder prediction 45 70 - -
Bpe08g00017 352 SMART HOX_1 254 319 IPR001356 GO:0003677
Bpe08g00017 352 Pfam KNOX2 domain 150 196 IPR005541 GO:0003677|GO:0005634
Bpe08g00017 352 ProSiteProfiles 'Homeobox' domain profile. 252 315 IPR001356 GO:0003677
Bpe08g00017 352 ProSitePatterns 'Homeobox' domain signature. 290 313 IPR017970 GO:0000981|GO:0006355
Bpe08g00017 352 PANTHER - 3 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00473 Bpe-Chr2:3066712 Bpe08g00017 Bpe-Chr8:128311 4.10E-92 dispersed
Bpe04g00135 Bpe-Chr4:914907 Bpe08g00017 Bpe-Chr8:128311 9.61E-83 dispersed
Bpe08g00017 Bpe-Chr8:128311 Bpe12g00659 Bpe-Chr12:12206010 7.19E-82 dispersed
Bpe01g00025 Bpe-Chr1:224535 Bpe08g00017 Bpe-Chr8:128311 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21698 PF03791 KNOX2 4.90E-21 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00017 - - rcu:8277968 540.806