Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe08g00017 | ATGGAGGGTGGGGCTAGTGGCGCCACTGGTCTGATGGCGTTTGGAGAAAACAGTAACGGGCTGTGTTCAATGATGACGATGATGCATGGTATGAGCGCCCATCATACTCATCTTAACTCAATCGCGGAGACCAACAGTCCATTTCTTCCGCTGCCTTCTTCGACTACCAACAATCACGACCAAAATCGTAATAGTAGCAGCGGTTCTTTTATAGTCGAGGACCGTCAAAACAACAGCTCTTGGTGTTATTTCATGGACAGCCACAATAATGCTGACAACAACTCGTCTTCTGATGTCAAGGCTAAGATTATGGCTCATCCTCACTATCATCGTCTGTTAGCTGCTTATCTTAATTGTCAAAAGGTAGGGGCTCCGCCGGAAGTGGTGGTTAAGCTAGAGGAAGCTTGTGCTTCAATGGCGTCAATGGGCCACGCTGGTACCGGATGTCTCGGTGAAGATCCAGCGTTAGATCAATTCATGGAAGCCTACTGTGAGATGCTGACCAAATACGAGCAAGAGCTCTCAAAACCCTTCAAGGAAGCCATGCTTTTTCTTCAAAGAATAGAATGCCAGTTCAAGGCTCTCACTGTTTCTTCAGACAATGGTTGGGAGGGAGGTGAAAGGAATGGATCATCAGAAGAAGAAGAAGTGGATGCAAACAACCAGGGCATTGATCCGCAAGCAGAAGACAGGGAGCTCAAGGGTCAGCTTCTGCGCAGGTACAGTGGATATTTAGGAAGCCTGAAGCAGGAGTTCATGAAGAAGCGGAAGAAAGGTAAGCTGCCGAAAGAGGCGAGGCAACAGCTACTGGATTGGTGGAGTAGACATCACAAATGGCCTTACCCTTCGGAGTCGCAGAAGTTGGCTCTTGCGGAGTCGACCGGATTGGATCAGAAGCAGATAAACAACTGGTTTATAAATCAAAGGAAAAGGCATTGGAAGCCTTCGGAAGATATGCAGTTTGTGGTGATGGATGCAGCCCACCCCCATCCACAGTATTTCATGGACAGCGCCTTGGGAAATCCTTTTCCCTTGGACATCACACCAGCCTTGCTCTGA | 1059 | 48.25 | MEGGASGATGLMAFGENSNGLCSMMTMMHGMSAHHTHLNSIAETNSPFLPLPSSTTNNHDQNRNSSSGSFIVEDRQNNSSWCYFMDSHNNADNNSSSDVKAKIMAHPHYHRLLAAYLNCQKVGAPPEVVVKLEEACASMASMGHAGTGCLGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMLFLQRIECQFKALTVSSDNGWEGGERNGSSEEEEVDANNQGIDPQAEDRELKGQLLRRYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHHKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHPQYFMDSALGNPFPLDITPALL | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 128311 | 130326 | - | Bpe022118.1 | Bpe08g00017 | 106893 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe08g00017 | 352 | MobiDBLite | consensus disorder prediction | 201 | 232 | - | - | |
Bpe08g00017 | 352 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 3 | 341 | - | - | |
Bpe08g00017 | 352 | Pfam | ELK domain | 232 | 253 | IPR005539 | GO:0003677 | |
Bpe08g00017 | 352 | Pfam | KNOX1 domain | 99 | 137 | IPR005540 | GO:0003677|GO:0005634 | |
Bpe08g00017 | 352 | SMART | KNOX1_2 | 97 | 141 | IPR005540 | GO:0003677|GO:0005634 | |
Bpe08g00017 | 352 | CDD | homeodomain | 264 | 316 | IPR001356 | GO:0003677 | |
Bpe08g00017 | 352 | SUPERFAMILY | Homeodomain-like | 254 | 330 | IPR009057 | - | |
Bpe08g00017 | 352 | SMART | KNOX2_2 | 146 | 197 | IPR005541 | GO:0003677|GO:0005634 | |
Bpe08g00017 | 352 | SMART | ELK_2 | 232 | 253 | IPR005539 | GO:0003677 | |
Bpe08g00017 | 352 | Pfam | Homeobox KN domain | 272 | 311 | IPR008422 | GO:0003677|GO:0006355 | |
Bpe08g00017 | 352 | Gene3D | - | 250 | 321 | - | - | |
Bpe08g00017 | 352 | ProSiteProfiles | ELK domain profile. | 232 | 252 | IPR005539 | GO:0003677 | |
Bpe08g00017 | 352 | MobiDBLite | consensus disorder prediction | 45 | 70 | - | - | |
Bpe08g00017 | 352 | SMART | HOX_1 | 254 | 319 | IPR001356 | GO:0003677 | |
Bpe08g00017 | 352 | Pfam | KNOX2 domain | 150 | 196 | IPR005541 | GO:0003677|GO:0005634 | |
Bpe08g00017 | 352 | ProSiteProfiles | 'Homeobox' domain profile. | 252 | 315 | IPR001356 | GO:0003677 | |
Bpe08g00017 | 352 | ProSitePatterns | 'Homeobox' domain signature. | 290 | 313 | IPR017970 | GO:0000981|GO:0006355 | |
Bpe08g00017 | 352 | PANTHER | - | 3 | 341 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe02g00473 | Bpe-Chr2:3066712 | Bpe08g00017 | Bpe-Chr8:128311 | 4.10E-92 | dispersed | |
Bpe04g00135 | Bpe-Chr4:914907 | Bpe08g00017 | Bpe-Chr8:128311 | 9.61E-83 | dispersed | |
Bpe08g00017 | Bpe-Chr8:128311 | Bpe12g00659 | Bpe-Chr12:12206010 | 7.19E-82 | dispersed | |
Bpe01g00025 | Bpe-Chr1:224535 | Bpe08g00017 | Bpe-Chr8:128311 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21698 | PF03791 | KNOX2 | 4.90E-21 | No_clan | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe08g00017 | - | - | rcu:8277968 | 540.806 |