Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00040 TCGAAGAACAGTAGTTCTGGTGACATCTCCATGGATCCTATTAGTGGTAACAATAGTACGAGTCTCAGCAACAACTCCAACCTTGCTGCAAAGCAACGGCTGCGATGGACACATGAACTTCATGAACGTTTTGTAGATGCCGTGGCTCAGCTTGGTGGGCCAGATCGTGCCACTCCCAAAGGTGTTCTTAGAGTGATGGGTGTGCAAGGTTTAACCATATACCATGTTAAAAGTCACTTACAGAAATATCGACTTGCAAAGTACCTTCCTGATTCATCATCAGATGACTCCGGTAGTTATTATTTTCTTTACATTGTGGAAGGAAAAAATGCTGACAAGAAAGAATCTGGAGATTTGCTTTCTAATTTGGATGGATCATCTGGAATGCAAATTACTGAAGCACTAAAGCTACAAATGGAGGTTCAGAAACGACTTCATGAACAATTAGAGGCATATTATAAATTGTTTGTTATTTGTACGCAGGTGCAGAGACAATTACAATTGCGAATTGAAGCGCAAGGCAAGTACTTGAAGAAGATAATTGAAGAGCAACAAAGACTTACTGGGGTCCTTTCAGAAGTTCCAGCTTCTACCATGTCAGCCGCCATATCAGGTGACAAGAATGAGCCAGCAACACCAGGTGCAACCTCCGAATCTCCCCTCCAGGAAAAGGCTGCTAAGCAATGCGCTCTAGCCAAGAGCCTCTCTCTTGAGGATTCTCTATCTTCTTCTCATGAGCCATTAACTCCAGATTCTTGCTGCCACGTCCGCCATCCAGATGACAGCCCCAAAGGTGAAAGGTCGACCAAGCAACAACAGGCCATTACAGGTGGAGCCTATGGAAAACCCGAAATGGTGCTTACTCATCATATTCTTGAGTCGAGTAGAAGTCCTTCCTTCCAGCAACCTCATTCCACTACAGGAATTGTATGCAGTGATGATTTAGTTAACGCTAATTCCTGCAATCTGTAA 972 43.72 SKNSSSGDISMDPISGNNSTSLSNNSNLAAKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDDSGSYYFLYIVEGKNADKKESGDLLSNLDGSSGMQITEALKLQMEVQKRLHEQLEAYYKLFVICTQVQRQLQLRIEAQGKYLKKIIEEQQRLTGVLSEVPASTMSAAISGDKNEPATPGATSESPLQEKAAKQCALAKSLSLEDSLSSSHEPLTPDSCCHVRHPDDSPKGERSTKQQQAITGGAYGKPEMVLTHHILESSRSPSFQQPHSTTGIVCSDDLVNANSCNL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 226089 228396 + Bpe022138.1 Bpe08g00040 106916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00040 323 MobiDBLite consensus disorder prediction 1 24 - -
Bpe08g00040 323 MobiDBLite consensus disorder prediction 251 267 - -
Bpe08g00040 323 Pfam MYB-CC type transfactor, LHEQLE motif 162 186 IPR025756 -
Bpe08g00040 323 Pfam MYB-CC type transfactor, LHEQLE motif 129 151 IPR025756 -
Bpe08g00040 323 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 31 86 IPR006447 GO:0003677
Bpe08g00040 323 MobiDBLite consensus disorder prediction 201 223 - -
Bpe08g00040 323 Pfam Myb-like DNA-binding domain 34 84 IPR001005 -
Bpe08g00040 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 11 306 - -
Bpe08g00040 323 SUPERFAMILY Homeodomain-like 30 85 IPR009057 -
Bpe08g00040 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 88 IPR017930 -
Bpe08g00040 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 11 306 IPR044848 GO:0003700
Bpe08g00040 323 MobiDBLite consensus disorder prediction 240 278 - -
Bpe08g00040 323 Gene3D - 30 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01059 Bpe-Chr3:29844559 Bpe08g00040 Bpe-Chr8:226089 1.51E-66 dispersed
Bpe08g00040 Bpe-Chr8:226089 Bpe09g00654 Bpe-Chr9:15166538 6.28E-48 dispersed
Bpe08g00040 Bpe-Chr8:226089 Bpe04g01353 Bpe-Chr4:20055325 1.47E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21700 PF00249 Myb_DNA-binding 2.10E-08 CL0123 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00040 - - vvi:100248144 381.333