Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00040 TCGAAGAACAGTAGTTCTGGTGACATCTCCATGGATCCTATTAGTGGTAACAATAGTACGAGTCTCAGCAACAACTCCAACCTTGCTGCAAAGCAACGGCTGCGATGGACACATGAACTTCATGAACGTTTTGTAGATGCCGTGGCTCAGCTTGGTGGGCCAGATCGTGCCACTCCCAAAGGTGTTCTTAGAGTGATGGGTGTGCAAGGTTTAACCATATACCATGTTAAAAGTCACTTACAGAAATATCGACTTGCAAAGTACCTTCCTGATTCATCATCAGATGACTCCGGTAGTTATTATTTTCTTTACATTGTGGAAGGAAAAAATGCTGACAAGAAAGAATCTGGAGATTTGCTTTCTAATTTGGATGGATCATCTGGAATGCAAATTACTGAAGCACTAAAGCTACAAATGGAGGTTCAGAAACGACTTCATGAACAATTAGAGGCATATTATAAATTGTTTGTTATTTGTACGCAGGTGCAGAGACAATTACAATTGCGAATTGAAGCGCAAGGCAAGTACTTGAAGAAGATAATTGAAGAGCAACAAAGACTTACTGGGGTCCTTTCAGAAGTTCCAGCTTCTACCATGTCAGCCGCCATATCAGGTGACAAGAATGAGCCAGCAACACCAGGTGCAACCTCCGAATCTCCCCTCCAGGAAAAGGCTGCTAAGCAATGCGCTCTAGCCAAGAGCCTCTCTCTTGAGGATTCTCTATCTTCTTCTCATGAGCCATTAACTCCAGATTCTTGCTGCCACGTCCGCCATCCAGATGACAGCCCCAAAGGTGAAAGGTCGACCAAGCAACAACAGGCCATTACAGGTGGAGCCTATGGAAAACCCGAAATGGTGCTTACTCATCATATTCTTGAGTCGAGTAGAAGTCCTTCCTTCCAGCAACCTCATTCCACTACAGGAATTGTATGCAGTGATGATTTAGTTAACGCTAATTCCTGCAATCTGTAA 972 43.72 SKNSSSGDISMDPISGNNSTSLSNNSNLAAKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDDSGSYYFLYIVEGKNADKKESGDLLSNLDGSSGMQITEALKLQMEVQKRLHEQLEAYYKLFVICTQVQRQLQLRIEAQGKYLKKIIEEQQRLTGVLSEVPASTMSAAISGDKNEPATPGATSESPLQEKAAKQCALAKSLSLEDSLSSSHEPLTPDSCCHVRHPDDSPKGERSTKQQQAITGGAYGKPEMVLTHHILESSRSPSFQQPHSTTGIVCSDDLVNANSCNL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 226089 228396 + Bpe022138.1 Bpe08g00040 106916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00040 323 MobiDBLite consensus disorder prediction 1 24 - -
Bpe08g00040 323 MobiDBLite consensus disorder prediction 251 267 - -
Bpe08g00040 323 Pfam MYB-CC type transfactor, LHEQLE motif 162 186 IPR025756 -
Bpe08g00040 323 Pfam MYB-CC type transfactor, LHEQLE motif 129 151 IPR025756 -
Bpe08g00040 323 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 31 86 IPR006447 GO:0003677
Bpe08g00040 323 MobiDBLite consensus disorder prediction 201 223 - -
Bpe08g00040 323 Pfam Myb-like DNA-binding domain 34 84 IPR001005 -
Bpe08g00040 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 11 306 - -
Bpe08g00040 323 SUPERFAMILY Homeodomain-like 30 85 IPR009057 -
Bpe08g00040 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 88 IPR017930 -
Bpe08g00040 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 11 306 IPR044848 GO:0003700
Bpe08g00040 323 MobiDBLite consensus disorder prediction 240 278 - -
Bpe08g00040 323 Gene3D - 30 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00040 - - - vvi:100248144 381.333
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01059 Bpe-Chr3:29844559 Bpe08g00040 Bpe-Chr8:226089 1.51E-66 dispersed
Bpe08g00040 Bpe-Chr8:226089 Bpe09g00654 Bpe-Chr9:15166538 6.28E-48 dispersed
Bpe08g00040 Bpe-Chr8:226089 Bpe04g01353 Bpe-Chr4:20055325 1.47E-69 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT3G24120 55.7 5.1e-77 284.6
Bpe14g00844 . 6 268 G2-like Transcription Factor Family AT3G24120 55.6 1.1e-66 250.4
Bpe07g00477 CCT 20 184 G2-like Transcription Factor Family AT3G24120 57.7 2.4e-42 169.5
Bpe15g00926 CCT 23 174 G2-like Transcription Factor Family AT3G24120 59.7 2.6e-41 166.0
Bpe12g00030 . 14 169 G2-like Transcription Factor Family AT3G24120 56.6 1.2e-38 157.1
Bpe01g00053 . 18 148 G2-like Transcription Factor Family AT3G24120 61.9 1.8e-37 153.3
Bpe02g02281 CCT 2 243 G2-like Transcription Factor Family AT1G25550 54.1 2.8e-61 232.3
Bpe13g01332 CCT 1 253 G2-like Transcription Factor Family AT1G25550 52.9 6.9e-60 227.6
Bpe13g01332 CCT 1 295 G2-like Transcription Factor Family AT1G13300 50.2 2.0e-61 233.0
Bpe08g00093 . 1 269 G2-like Transcription Factor Family AT3G46640 51.1 1.3e-62 236.9
Bpe02g00025 . 1 306 G2-like Transcription Factor Family AT5G05090 53.6 2.0e-72 269.2
Bpe04g00533 . 1 309 G2-like Transcription Factor Family AT5G05090 51.7 5.4e-70 261.2
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT4G13640 53.5 6.0e-62 234.6
Bpe14g00844 . 6 293 G2-like Transcription Factor Family AT4G13640 54.4 1.1e-55 213.8
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT3G24120 55.7 5.1e-77 284.6
Bpe14g00844 . 6 268 G2-like Transcription Factor Family AT3G24120 55.6 1.1e-66 250.4
Bpe07g00477 CCT 20 184 G2-like Transcription Factor Family AT3G24120 57.7 2.4e-42 169.5
Bpe15g00926 CCT 23 174 G2-like Transcription Factor Family AT3G24120 59.7 2.6e-41 166.0
Bpe12g00030 . 14 169 G2-like Transcription Factor Family AT3G24120 56.6 1.2e-38 157.1
Bpe01g00053 . 18 148 G2-like Transcription Factor Family AT3G24120 61.9 1.8e-37 153.3
Bpe11g01644 . 1 191 G2-like Transcription Factor Family AT1G69580 50.3 1.3e-41 167.2
Bpe15g00926 CCT 1 279 G2-like Transcription Factor Family AT1G79430 54.4 4.2e-70 261.9
Bpe07g00477 CCT 1 274 G2-like Transcription Factor Family AT1G79430 58.5 4.1e-65 245.4
Bpe12g00030 . 1 221 G2-like Transcription Factor Family AT1G79430 55.9 7.0e-57 218.0
Bpe13g00855 . 36 201 G2-like Transcription Factor Family AT1G79430 61.3 4.6e-40 162.2
Bpe08g00040 . 66 302 G2-like Transcription Factor Family AT2G01060 54.4 7.4e-55 210.7
Bpe02g00025 . 1 306 G2-like Transcription Factor Family AT3G10760 65.1 4.7e-95 344.7
Bpe04g00533 . 1 309 G2-like Transcription Factor Family AT3G10760 63.2 3.1e-91 332.0
Bpe02g00025 . 1 208 G2-like Transcription Factor Family AT2G40970 63.6 5.4e-64 241.1
Bpe04g00533 . 1 208 G2-like Transcription Factor Family AT2G40970 62.4 1.2e-60 229.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21700 PF00249 Myb_DNA-binding 2.10E-08 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00040 Bpe_Chr08 FPKM 28.781839 32.628685 35.358299 36.869743 47.110542 46.396805 50.680061 47.529102 45.687332 46.435101