Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00052 ATGTCGTCCTCTTTTGGAAGCTTAGATACCTCTGCCAACTCTCATCCAAGCTTCAACTTCATGACCCCCTCCTTTTCCGACCTCTTGGCCTATGGCCCCGATGAGGGGCAGGGCCAGCCGATCAACGGTCATGGCCGTCTTGGGTTGTCGGATAGGATAGCGGAAAGAACAGGGTCGGGTGTGCCCAAGTTCAAGTCCTTTCCTCCGCCGTCACTCCCTTTGTCTCCACCTCCTGTTTCGCCCTCTTCTTACTTCGCTATTCCTGCTGGGTTGAGCCCGGCTGAGCTCTTGGATTCGCCTGTTCTTTTTAACTCCTCTAACCGTACTCTGCCATCTCCGACGACGGGAACATTTCCTTTCCAATCTTACAACTGGAAGAGCAATTCTCACTTTAACCAACAGAATATTAAACAGGAGAGCAAAAACTTCTCAGAGTTCTCCTTCCAAACGCAGCCAAAGCCTCTCTCAGTCAGCACAAATCCACCGACTCAGCAACAAGCATGGAATTCTCGAGAATCATCGAGGCAGAATGAATTTTCATCGGAAATTGGACCAAAGGTGACCGATTTCACGTCGACACAGATAGTTTATCCTCAAAACGACGGTGGAATTCAATCGAACTACAGCGACCACCACCACCAACAGGGTCAGACGATGAGCAGGAGATCGGACGATGGCTACAACTGGAGAAAATACGGCCAAAAACAGGTAAAAGGAAGCGAAAATCCAAGAAGTTATTACAAGTGCACGTTCCCCAGTTGCCCCACCAAGAAGAAGGTCGAAAGGTCCTTAGACGGCCAAATTACTGAGATTGTCTACAAGGGTAGCCATAACCATCCAAAACCTCAGTCGACGAGAAGGTCTTCATCGTCGTCTTTACCTGCTCCTCAGACCATTCAAGCTTCTAATCCTGTTCCTGAACAATCATATGCCCCTCACGGAAATGGACAAACAGACTCCGCGGCCACACCTGAGAATTCCTCCATAACGATGGGGGACGATGATTTTGAGCAGAGCTCCCACAGCAGTAAACGGGGAGCAGATGACTTTGATGAAGACGAAACAACTGCGAAAAGATGGAAAATGGAGGGCGACAGCGAAGGAATGTCAGCAGCCGGAAGTAGAACAGTGAGAGAGCCTAGAGTCGTAGTTCAAACCACGAGTGACATAGATATTTTAGACGATGGATACAGATGGAGAAAATATGGGCAAAAAGTGGTGAAGGGAAACCCCAATCCAAGGAGCTACTACAAGTGCACAAACCCAGGCTGTCCTGTAAGAAAGCACGTAGAGAGAGCCTCCCATGATTTGAGGGCAGTCATTACAACCTATGAGGGGAAACACAGCCACGATGTTCCAGCCGCACGAGGGAGTGGCTCAGCTGCCGTGATTAAGCCTTCCACTCTCAGCCACGCTCCAAGGCTTCAGACCTCCCGAGGCCAACCAACCGTCGGCCTAGAGATCGGGAGGAACCCCCCAAGTTTTACATTCAGCGGCGACTATGGAATGAATCAGCCACTGTTTAATGAGAATATGTTCTTGAGAACCAAGGAGGAGTTAAAGGATGATGCTTTCTTCGAATCGTTGCTACGTTGA 1596 49.44 MSSSFGSLDTSANSHPSFNFMTPSFSDLLAYGPDEGQGQPINGHGRLGLSDRIAERTGSGVPKFKSFPPPSLPLSPPPVSPSSYFAIPAGLSPAELLDSPVLFNSSNRTLPSPTTGTFPFQSYNWKSNSHFNQQNIKQESKNFSEFSFQTQPKPLSVSTNPPTQQQAWNSRESSRQNEFSSEIGPKVTDFTSTQIVYPQNDGGIQSNYSDHHHQQGQTMSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSSSSLPAPQTIQASNPVPEQSYAPHGNGQTDSAATPENSSITMGDDDFEQSSHSSKRGADDFDEDETTAKRWKMEGDSEGMSAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHSHDVPAARGSGSAAVIKPSTLSHAPRLQTSRGQPTVGLEIGRNPPSFTFSGDYGMNQPLFNENMFLRTKEELKDDAFFESLLR 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 278046 280134 - Bpe022150.1 Bpe08g00052 106928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00052 531 MobiDBLite consensus disorder prediction 197 228 - -
Bpe08g00052 531 MobiDBLite consensus disorder prediction 337 365 - -
Bpe08g00052 531 SUPERFAMILY WRKY DNA-binding domain 222 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe08g00052 531 SMART WRKY_cls 223 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe08g00052 531 SMART WRKY_cls 393 452 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe08g00052 531 MobiDBLite consensus disorder prediction 29 75 - -
Bpe08g00052 531 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 43 471 IPR044810 GO:0003700
Bpe08g00052 531 Pfam WRKY DNA -binding domain 394 450 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe08g00052 531 Pfam WRKY DNA -binding domain 224 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe08g00052 531 ProSiteProfiles WRKY domain profile. 388 453 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe08g00052 531 ProSiteProfiles WRKY domain profile. 224 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe08g00052 531 MobiDBLite consensus disorder prediction 278 336 - -
Bpe08g00052 531 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 43 471 - -
Bpe08g00052 531 SUPERFAMILY WRKY DNA-binding domain 385 453 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe08g00052 531 Gene3D WRKY domain 208 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe08g00052 531 MobiDBLite consensus disorder prediction 272 377 - -
Bpe08g00052 531 MobiDBLite consensus disorder prediction 197 214 - -
Bpe08g00052 531 Gene3D WRKY domain 380 446 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe08g00052 531 MobiDBLite consensus disorder prediction 146 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00733 Bpe-Chr3:27429969 Bpe08g00052 Bpe-Chr8:278046 8.40E-92 dispersed
Bpe04g01294 Bpe-Chr4:19204471 Bpe08g00052 Bpe-Chr8:278046 2.52E-106 dispersed
Bpe08g00052 Bpe-Chr8:278046 Bpe09g00135 Bpe-Chr9:910747 8.52E-94 dispersed
Bpe08g00052 Bpe-Chr8:278046 Bpe03g00760 Bpe-Chr3:27637758 1.92E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21702 PF03106 WRKY 6.80E-25 CL0274 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00052 K13424 - tcc:18591046 642.114