Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00178 ATGCTCTCACTGTGTCAATGCCATTGTCTAGGCCACGTCTCTCTCTTTCGCCATCCCTCCCATTTCAGGAGAGCTATCTCTCTGTCTCTTATCCAAACCAGCTCCGTCTCTCTTAAGCCCTTCTTCTCTTTACGCTGTAATAACGCTATGTCTTCACGCCCTTCTGCTTTCGATGCATTAATGTCTGGTGCTCGTGCTGCAGCCAAGAAAAAACCCCAACCTTCTTCTCCCAAGAAGCGTAAAACCCTAGATTCTTCAATCCCTCCCCTAAAACCTAGTCCTACCAAAGCCCTTGATTTGCCGCCGGCTATTGAGCAACAGAGTGACAGTCGAGTTCTCGTCAGTTGTAATGGTCCTAGTTCAGGGGTTTCTGCAGATATCCATAGTTCGTTAGATGTTGACCAAGTTGTGGAAAATGGTGGCGATTTCGGAACCCAGAATGCACCGGTTGCGAAGAAAATGTGTGCGTCGAGTATTGAGGAGAGAATTGGTAAATTGAAGAGTAGTATCTCCGAATTGAAGAAAAAGGCAAAAGATTTTGATCCGCAATCGGTAGCTTGTTGGAAAAAGGGAGAACGGGTACCCTTTCTGTTTCTATGTTTGACTTTCGATATGATATCTGGGGAGTCTAGTCGGATTATGATTACAGATATAGTGTGCAATATGTTGAGGACTGTAATGCATTCCACGCCTGATGATTTGGTTGCCATCGTTTACCTTTTGGCCAACAAAATAGCTCCCTCGCATGAGGGGTTGGAGCTTGGAATAGGTGATGCATCGATTATCAAAGCACTCGCAGAAGCTTTTGGGAGGACTGAAGTTCAGGTTAAAAAGCAATACAAGGAATTGGGAGATTTAGGTCTTGTTGCAAAAGCAAGCCGCTCATCTCAATCAATGATGCGAAAGCCTGATGCATTAAATGTTGTCAAAGTTTTTGAAGAATCTGGAAAGGATAGTCAAGAGAAAAAGAAGAACCATATAAAGTCACTTCTTGTAGCTGCCACTGACTGTGAACCCCTATATTTGATTCGACTGCTGCAGGCAAAGTTGCGAATCGGATTGGCTGAGCAGACACTTCTTGCTGCATTGGGGCAAGCTGCCGTATATGCTGAAAAACATTCTAAACCACCATCGCACATCCAATCTCCTTTAGAAGAGGCTACCAAGATTGTTAAACAAGTCTACTCAGTACTTCCAGTTTATGATAAAATTATCCCTGCGCTTCTCAATGGTGGTGTGTGGAATCTTTCCAAAACGTGTAGCTTTACACCAGGTGTCCCTGTTGGACCTATGCTGGCAAAACCAACTAAGGGTGTATCTGAGATCACAAATAAATTCCAGGATATGGAATTTACCTGTGAATACAAGTATGATGGGGAACGTGCCCAGATACATTACATGGAAAATGATTTGGTTGAGATATACAGCAGAAACGCCGAACGAAACACTGGGAAGTTCCCTGATGTTGTCGCTGCAGTATCAAGGTTAAAAAAATCATCTGTTAGATCATTTATTTTGGATTGTGAAATAGTTGCTTATGACCGAGAAAAGAAGAAGATTCTACCTTTTCAGATCCTAAGTACCCGAGCTCGCAAAAATGTGGTTGTAAGCGACATCAAGGTTGATGTTTGCATATTTGCATTTGATTTATTGTATCTTAATGGCCAACCGCTTATTCAGGAAGAACTGAAAGTTCGTAGAGAGCACCTTTATAATTCGTTTCGGGAAGAAACTGGATACTTTCAGTTTGCCACAGCAATAACAACAAATGACCTTGAGGAGATACAGAAGTTTCTTGACGCTGCTGTTGATGAAAGTTGTGAGGGGTTAATTATCAAAACGTTAGATAGAGATGCAACTTATGAGCCTTCCAGAAGGTCCCTTAACTGGTTAAAACTGAAGAAAGATTACATAGACAATATAGGGGACTCGCTTGATTTGGTACCGATAGCGGCTTTCCATGGCCGGGGAAAGCGAACAGGGGTTTATGGCGCATTTCTCCTTGCTTGCTATGACAATGATAATGAAGAATTTCAAAGCATTTGCAAAATAGGAACTGGGTTTTCTGAAGCAATGCTTGAAGAACGTTCTGCTAGTCTACGTCATAGAGTGATTACTGAACCGAAGTCTTACTATCGGTATGGGGACTCAATCAATCCTGATGTGTGGTTTGAACCTTCTGAGGTTTGGGAGGTTAAAGCTGCTGACTTGACAATCAGTCCAGTTCATCGTGCAGGAATTGGCATTGTGGATCCCAATAAGGGCATCTCTCTTCGATTTCCTCGGCTTGTTCGTGTTCGGCAAGACAAGAATCCAGAACAAGCCTCGTCATCTGAGCAAGTGGCTGAGATGTATAATGCTCAAAAACACAATCAACATAACAACCAAGAAGACAATGAAGATGATTGA 2409 42.67 MLSLCQCHCLGHVSLFRHPSHFRRAISLSLIQTSSVSLKPFFSLRCNNAMSSRPSAFDALMSGARAAAKKKPQPSSPKKRKTLDSSIPPLKPSPTKALDLPPAIEQQSDSRVLVSCNGPSSGVSADIHSSLDVDQVVENGGDFGTQNAPVAKKMCASSIEERIGKLKSSISELKKKAKDFDPQSVACWKKGERVPFLFLCLTFDMISGESSRIMITDIVCNMLRTVMHSTPDDLVAIVYLLANKIAPSHEGLELGIGDASIIKALAEAFGRTEVQVKKQYKELGDLGLVAKASRSSQSMMRKPDALNVVKVFEESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQAKLRIGLAEQTLLAALGQAAVYAEKHSKPPSHIQSPLEEATKIVKQVYSVLPVYDKIIPALLNGGVWNLSKTCSFTPGVPVGPMLAKPTKGVSEITNKFQDMEFTCEYKYDGERAQIHYMENDLVEIYSRNAERNTGKFPDVVAAVSRLKKSSVRSFILDCEIVAYDREKKKILPFQILSTRARKNVVVSDIKVDVCIFAFDLLYLNGQPLIQEELKVRREHLYNSFREETGYFQFATAITTNDLEEIQKFLDAAVDESCEGLIIKTLDRDATYEPSRRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRHRVITEPKSYYRYGDSINPDVWFEPSEVWEVKAADLTISPVHRAGIGIVDPNKGISLRFPRLVRVRQDKNPEQASSSEQVAEMYNAQKHNQHNNQEDNEDD 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 981689 987592 - Bpe022273.1 Bpe08g00178 107054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00178 802 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 140 802 - -
Bpe08g00178 802 Pfam ATP dependent DNA ligase C terminal region 659 770 IPR012309 GO:0003910|GO:0006281|GO:0006310
Bpe08g00178 802 SUPERFAMILY Nucleic acid-binding proteins 642 788 IPR012340 -
Bpe08g00178 802 MobiDBLite consensus disorder prediction 770 792 - -
Bpe08g00178 802 MobiDBLite consensus disorder prediction 767 802 - -
Bpe08g00178 802 Gene3D - 639 801 IPR012340 -
Bpe08g00178 802 Gene3D - 170 432 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bpe08g00178 802 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 454 462 IPR016059 GO:0003909
Bpe08g00178 802 Pfam DNA ligase N terminus 195 363 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bpe08g00178 802 Pfam ATP dependent DNA ligase domain 430 634 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bpe08g00178 802 Gene3D DNA ligase/mRNA capping enzyme 459 584 - -
Bpe08g00178 802 Coils Coil 156 176 - -
Bpe08g00178 802 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 253 785 IPR000977 GO:0003910|GO:0005524|GO:0071897
Bpe08g00178 802 ProSiteProfiles ATP-dependent DNA ligase family profile. 536 672 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bpe08g00178 802 MobiDBLite consensus disorder prediction 63 100 - -
Bpe08g00178 802 CDD OBF_DNA_ligase_I 642 787 - -
Bpe08g00178 802 ProSitePatterns ATP-dependent DNA ligase signature 2. 608 634 IPR016059 GO:0003909
Bpe08g00178 802 PANTHER DNA LIGASE 1 140 802 - -
Bpe08g00178 802 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 176 420 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bpe08g00178 802 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 422 640 - -
Bpe08g00178 802 CDD Adenylation_DNA_ligase_I_Euk 419 637 - -
Bpe08g00178 802 Gene3D - 440 638 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00178 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] - csv:101213447 1186.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00178 Bpe-Chr8:981689 Bpe14g00098 Bpe-Chr14:1463138 2.22E-164 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1100 . . . Bda09g01436 . . . . . . . . . . . . . . . . . . . . Cla02g02101 Cam02g2230 Cec02g2268 Cco02g2308 Clacu02g2212 Cmu02g2147 Cre02g2464 . . . . . Csa06g01233 Chy11g00843 . Blo08g00019 . . . Bpe08g00178 . Bma07g00168 . Sed05g2803 . Cmo20g00553 . Cma20g00522 . Car20g00461 Cpe16g00505 . Bhi10g00144 Tan05g0202 Cmetu11g1276 . Hepe08g0926 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00926 . 145 829 Core DNA Replication Machinery Family AT4G14700 62.7 1.0e-249 859.8
Bpe11g00926 . 146 829 Core DNA Replication Machinery Family AT4G12620 63.5 1.5e-256 882.5
Bpe05g00056 . 7 358 Core DNA Replication Machinery Family AT2G37560 66.2 1.0e-137 486.5
Bpe02g02014 . 1 413 Core DNA Replication Machinery Family AT2G01120 61.4 2.5e-138 488.8
Bpe05g00990 . 4 534 Core DNA Replication Machinery Family AT4G29910 56.5 8.8e-171 597.0
Bpe02g02348 . 1 324 Core DNA Replication Machinery Family AT1G26840 59.6 1.3e-93 339.7
Bpe07g00465 . 1 800 Core DNA Replication Machinery Family AT1G79150 54.6 2.3e-228 788.9
Bpe08g01190 . 1 948 Core DNA Replication Machinery Family AT1G44900 75.4 0.0e+00 1364.4
Bpe01g00814 . 1 550 Core DNA Replication Machinery Family AT5G46280 81.0 1.8e-256 881.7
Bpe15g00852 CCT,ECH 1 826 Core DNA Replication Machinery Family AT2G16440 70.2 0.0e+00 1116.3
Bpe02g02150 . 936 1646 Core DNA Replication Machinery Family AT2G07690 77.2 0.0e+00 1075.8
Bpe08g00796 . 18 846 Core DNA Replication Machinery Family AT5G44635 69.9 0.0e+00 1113.6
Bpe10g00498 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1189.5
Bpe01g00096 . 40 517 Core DNA Replication Machinery Family AT2G29680 56.7 2.5e-148 522.3
Bpe01g00096 . 1 479 Core DNA Replication Machinery Family AT1G07270 54.8 2.6e-136 482.3
Bpe10g00347 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.6 9.3e-256 879.4
Bpe04g01592 . 28 854 Core DNA Replication Machinery Family AT3G09660 68.0 4.8e-308 1053.5
Bpe15g00015 . 5 626 Core DNA Replication Machinery Family AT2G14050 66.5 4.0e-236 814.3
Bpe05g00287 . 29 421 Core DNA Replication Machinery Family AT2G20980 53.5 1.8e-109 392.9
Bpe09g00382 . 1 142 Core DNA Replication Machinery Family AT1G80190 69.0 6.3e-55 210.7
Bpe05g00429 . 1 143 Core DNA Replication Machinery Family AT3G12530 71.3 7.7e-58 219.9
Bpe08g00963 . 1 145 Core DNA Replication Machinery Family AT3G12530 65.5 6.8e-54 206.8
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT1G19080 65.9 4.6e-68 254.2
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT3G55490 65.9 4.6e-68 254.2
Bpe14g01095 . 16 165 Core DNA Replication Machinery Family AT5G49010 66.7 1.3e-52 203.0
Bpe15g00335 . 1 1555 Core DNA Replication Machinery Family AT5G67100 57.9 0.0e+00 1691.0
Bpe10g00777 . 2 617 Core DNA Replication Machinery Family AT1G67630 60.9 3.9e-220 761.1
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe05g00690 . 1 457 Core DNA Replication Machinery Family AT5G41880 63.8 4.2e-176 614.4
Bpe06g00299 . 27 1143 Core DNA Replication Machinery Family AT5G63960 78.3 0.0e+00 1749.9
Bpe03g01146 . 4 442 Core DNA Replication Machinery Family AT2G42120 77.2 4.7e-204 707.2
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe12g00614 . 6 120 Core DNA Replication Machinery Family AT1G09815 60.2 6.3e-37 150.2
Bpe01g00239 . 4 2121 Core DNA Replication Machinery Family AT1G08260 68.6 0.0e+00 2874.0
Bpe01g00239 . 11 2228 Core DNA Replication Machinery Family AT2G27120 65.7 0.0e+00 2848.5
Bpe07g01082 . 7 460 Core DNA Replication Machinery Family AT5G22110 63.7 2.6e-171 598.6
Bpe08g00232 . 7 905 Core DNA Replication Machinery Family AT5G22010 62.6 3.1e-282 968.0
Bpe05g00631 . 4 334 Core DNA Replication Machinery Family AT1G63160 89.4 1.8e-171 598.6
Bpe02g00056 CCT 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 1.6e-178 622.1
Bpe04g00011 . 4 337 Core DNA Replication Machinery Family AT1G21690 80.6 1.6e-151 532.3
Bpe14g00388 CCT 1 363 Core DNA Replication Machinery Family AT1G77470 78.2 5.0e-159 557.4
Bpe13g01237 . 26 617 Core DNA Replication Machinery Family AT2G06510 68.8 2.3e-249 858.2
Bpe07g00251 . 34 688 Core DNA Replication Machinery Family AT2G06510 53.2 3.6e-202 701.4
Bpe12g00524 CCT 1 626 Core DNA Replication Machinery Family AT5G08020 66.0 2.1e-239 825.1
Bpe07g00755 CCT 1 625 Core DNA Replication Machinery Family AT5G08020 65.7 4.4e-237 817.4
Bpe12g00524 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 65.2 6.6e-236 813.5
Bpe07g00755 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 64.4 8.1e-234 806.6
Bpe07g00251 . 8 809 Core DNA Replication Machinery Family AT4G19130 52.9 1.2e-229 793.1
Bpe02g01809 . 1 396 Core DNA Replication Machinery Family AT5G26680 79.7 5.1e-184 640.6
Bpe04g01926 . 1 299 Core DNA Replication Machinery Family AT2G25100 67.6 9.8e-115 409.8
Bpe08g00178 . 46 802 Core DNA Replication Machinery Family AT1G08130 68.0 1.0e-289 992.6
Bpe08g00178 . 209 802 Core DNA Replication Machinery Family AT1G49250 66.8 7.9e-232 800.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009502 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00178 Bpe_Chr08 FPKM 5.680957 8.408446 19.740673 23.096037 3.109569 4.15219 3.327122 25.14992 26.851387 28.993776