Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00180 TTAGATCAGATGGAACCATTCCCTACAAACCCACATCTGCAATTCCACGATTTCATCGCCGACCCTCATTTCCATCAGTTTGTCGATTTGATTCGCGGGGAACCCGTCTTCAACGTTGATCTCGATCTCGTCAATGGCTGCTTTGCGCATCCTGGGCTCAGTACGAGCCCTGGATTTGGGTTCGGTCCTGATCCGATCGCTGAGTTGGATCCGAGATCTGTGTTTGAGGAGTTGGTGAGTTTTGATGGAGGAGTAATTAGAGCGAAGGAAGATGATAATGAAGTAGACGATTCTTCAGCAGCTGTGACAATGGCGACCAAAGATACGAAGCTTGATCGATCAAGAACTTTGATATCAGAGAGAAGGAGAAGAGGGAGAATGAAAGAGAAGCTTCACAATTTGCGTTCTTTAGTTCCGAATATAACAAAGATGGACAAGGCCTCCATTGTTGGAGATGCTGTTTCGTACGTGCAAGAACTTCAAACGCAGACGAAGAAGCTCAGATCAGAGATAGCTGTTCTGGAGAGATCCATGGCTGGACCAGAAAGCTATCACCGGCTAACAGAAAACCCTAGAAAAAAGCTTCAAGCTCCAATCACCCATAACCTAATCGTTCCAAAGAAAATTATCGATCAGATGGACGTGTTTCAAGTGGAGGAAAGAGGGTTTTGCGTTAGACTGGTGAGTGAAGGAAGAAGAGGCGTAGCCATGGCACTGTACAAGGTTCTTGAATCCCTTACGAGCTTCAATCTTCAGAGCTCCAATTTGGCAATGGCGTCTGAGAGATTTGTCCTCACAGCTACCATGAATGTGAGGGATGTGGAGAAGGATATTAATTTGCCAAATTTGAAGCTTTTGGTGGCTGAGGCTCTTCTTGACCAGGGTTTTGAACTTAGACCAATGCATTAA 909 45.43 LDQMEPFPTNPHLQFHDFIADPHFHQFVDLIRGEPVFNVDLDLVNGCFAHPGLSTSPGFGFGPDPIAELDPRSVFEELVSFDGGVIRAKEDDNEVDDSSAAVTMATKDTKLDRSRTLISERRRRGRMKEKLHNLRSLVPNITKMDKASIVGDAVSYVQELQTQTKKLRSEIAVLERSMAGPESYHRLTENPRKKLQAPITHNLIVPKKIIDQMDVFQVEERGFCVRLVSEGRRGVAMALYKVLESLTSFNLQSSNLAMASERFVLTATMNVRDVEKDINLPNLKLLVAEALLDQGFELRPMH 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 994639 995831 + Bpe022275.1 Bpe08g00180 107056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00180 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 160 IPR011598 GO:0046983
Bpe08g00180 302 Pfam Helix-loop-helix DNA-binding domain 116 161 IPR011598 GO:0046983
Bpe08g00180 302 SMART finulus 117 166 IPR011598 GO:0046983
Bpe08g00180 302 Coils Coil 157 177 - -
Bpe08g00180 302 Gene3D - 103 177 IPR036638 GO:0046983
Bpe08g00180 302 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 88 297 - -
Bpe08g00180 302 PANTHER TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR 88 297 - -
Bpe08g00180 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 185 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe08g01301 Bpe08g00180 CCT
Bpe01g00218 Bpe08g00180 CCT
Bpe08g00180 Bpe11g00830 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00180 Bpe-Chr8:994639 Bpe13g01099 Bpe-Chr13:16569000 2.18E-15 dispersed
Bpe01g00218 Bpe-Chr1:1340377 Bpe08g00180 Bpe-Chr8:994639 1.31E-151 wgd
Bpe11g00830 Bpe-Chr11:6188792 Bpe08g00180 Bpe-Chr8:994639 4.18E-91 wgd
Bpe08g00180 Bpe-Chr8:994639 Bpe08g01301 Bpe-Chr8:14326376 1.07E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21715 PF00010 HLH 1.30E-10 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00180 - - tcc:18590468 295.819