Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00206 ATGGGTTTAAGAAGCCACCTCGACGAAGAAAACATTCTTTGTTTTCGGTCTCAGCCTTTCATCGAGTGGCTCAAACCACCATCCTCTTCGTCTTCTTCGTCGGCTCTTTTCGCTGCTCCCATGGCGGATTCCACCCAGTGTCTTCCTCTTCTGAGCAGGTTCTCGGAGAAAAAACCAGTGAAGAAGGAAGAAGATGACTATAAAGTCATGGTGACTTTGCATATAGGATTGCCCAGTAAAGATGATTCTGATCAAGATGAAGAAAATCATCAGAGTTTTACAGAAATATCAAGGAATCGCTCTAATGGCTGCTCTTTTAACTCAGAAAGCAGATTTTGGATTCCAACTCCTTCGCAGATTCTTGTGGGGCCGATGCAGTTTGCTTGCTCAATATGCAGCAAGACCTTCAATCGATACAACAACATGCAGATGCATATGTGGGGACATGGATCAGAATACAGAAAAGGGCCAGATTCACTACGAGGAACACAGCCAGCAGCAATGCTAAGATTACCCTGCTATTGCTGTGCTCATGGCTGCAAGAACAACATAAACCATCCAAGAGCAAAGCCATTAAAGGACTTTAGAACTCTCCAAACCCACTACAAGAGGAAGCATGGATCCAAGCCATTTTCCTGCAGAAAGTGTGCGAAGCAATTTGCAGTGAAAGGAGATTGGAGAACCCACGAGAAAAATTGTGGGAAATTCTGGTATTGTTCTTGTGGGTCGGATTTTAAACACAAAAGATCACTCAAAGATCATATTAGGTCGTTTGGAAATGGCCACTCTCCAAACCCTCCTCTTGATGACAAGGAATTTTGCACGACTGTGTCTGAAGAAGATGAATTTACTGTCTTCTGA 861 43.55 MGLRSHLDEENILCFRSQPFIEWLKPPSSSSSSSALFAAPMADSTQCLPLLSRFSEKKPVKKEEDDYKVMVTLHIGLPSKDDSDQDEENHQSFTEISRNRSNGCSFNSESRFWIPTPSQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEYRKGPDSLRGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFSCRKCAKQFAVKGDWRTHEKNCGKFWYCSCGSDFKHKRSLKDHIRSFGNGHSPNPPLDDKEFCTTVSEEDEFTVF 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1146296 1148042 - Bpe022300.1 Bpe08g00206 107082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00206 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 267 IPR013087 -
Bpe08g00206 286 PANTHER ZINC FINGER PROTEIN WIP2 43 282 IPR043584 GO:0003700|GO:0010468
Bpe08g00206 286 ProSitePatterns Zinc finger C2H2 type domain signature. 129 149 IPR013087 -
Bpe08g00206 286 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 43 282 - -
Bpe08g00206 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 127 154 IPR013087 -
Bpe08g00206 286 SUPERFAMILY beta-beta-alpha zinc fingers 197 231 IPR036236 -
Bpe08g00206 286 MobiDBLite consensus disorder prediction 79 94 - -
Bpe08g00206 286 SMART c2h2final6 211 231 IPR013087 -
Bpe08g00206 286 SMART c2h2final6 174 206 IPR013087 -
Bpe08g00206 286 SMART c2h2final6 127 149 IPR013087 -
Bpe08g00206 286 MobiDBLite consensus disorder prediction 78 103 - -
Bpe08g00206 286 Gene3D Classic Zinc Finger 126 149 - -
Bpe08g00206 286 Gene3D Classic Zinc Finger 209 259 - -
Bpe08g00206 286 SUPERFAMILY beta-beta-alpha zinc fingers 118 150 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00206 Bpe-Chr8:1146296 Bpe10g00553 Bpe-Chr10:12575854 1.54E-100 dispersed
Bpe08g00206 Bpe-Chr8:1146296 Bpe06g00633 Bpe-Chr6:17106550 5.38E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21718 None None None None Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00206 - - cit:102615447 420.624