Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00221 ATGTCTGGCTCTCCGGCTCCCAACTCGTCGGAGCGTAAGCCTGAACAGATCGCTCTGTCTCAGAAGCGGCAGCTTCCTTTTTCTTCCATGAAACCGCCATTTGCTGCTTTTGGAGACTATCACCGCTTTGCACCCGACCCTCGCCGAGTCTCCGATCAAGATTCTGAGGGTATTGTGGTTAAATCTCCGCAATTAAAGAGAAAAAGTGGTACGCCAGATTTTGAAGCTGAATCTAGTGATAGAGCTACTGGTCCTGGATTCCTTGAAGTATCCAGCAGCTCTCTTCAAACACCTGGATCGGTAAAAGGAGGAAAAGGAAGCAAATCAAGGCTTACAAAGTGCAGTAGATTGGTACCTCAAACTCCTGTTTCGAACGTAGTGACAGGTTCACCTTCTGGCAATAATCTCGGATCAGCAGGTCCTTGCCGCTATGACAGTTCCCTAGGTCTCTTGACAAAAAAGTTTATCAACCTGATCAAACAAGCAGAAGATGGTATCCTCGACCTGAATAAAGCTGCAGACACATTAGAGGTGCAAAAAAGGCGAATATATGATATAACAAACGTACTTGAAGGAATTGGTCTGATAGAAAAGAAGCTGAAAAACAGAATTCAGTGGAAGGGGCTTGATGTGTCAAGGCCAGGGGATGATGATGGAAATTTTTCTAGCTTACAGGCAGAAGTCGAAAACCTTTCCATTGAGGAGCGTGGATTAGATGAACAAATAAGAGAAATGCAGGAAAGATTAAGAGATCTCAGTGAAAATGACAACAATCAGAGGTGGCTTTTTGTCACTGAAGAAGATATCAAAGGTTTGCCTTGTTTCCAGAATGAAACGTTGATAGCTATTAAGGCTCCACATGGGACTACTTTAGAAGTACCTGATCCTGACGAGGTAACTGAGTTTTTCCATGATAATTTTATTATGTGGCAGGCTGTTGACTATCCCCAAAGGAGGTACAGGATAGTCCTAAGAAGCACTATGGGTCCTATAGATGTCTACCTTGTCAGTCAATTTGAAGAAAAGTTTGAGGAGGTTAATGGTGTTGAAGTGCCTCTGACCACGATCTTACCTTCAACTTCCGGGTACAATGAGCCTCCCATGACAACAATGGAAACAGAAGAAAGTAGAGGGAAGAGTATTGAAATGCAAGAACCCGATGTTCATCAAATGTGCTCAGATCTTAATGCTTCACAGGACTTTGTGGGTGGGATTATGAAGATTGTTCCCTCGGAAGTGGACAGTGACGCTGATTACTGGCTTCTATCAGACGCTGATGTTAGCATTACTGACATGTGGAGAACTGAAACTGGTGTTGAATGGAACGATTTGGGTACACTTCATGAAGATTACCCTATGTCCAGCATTGACGAGATAGCCAATATCAGCTTGCCTCTTCCGCAGGCTTCACCAGCCCCATCTGCGGCAGGTGAATTACCTTCTAGTTCAAACCCTACTGGAAGTTGA 1467 44.1 MSGSPAPNSSERKPEQIALSQKRQLPFSSMKPPFAAFGDYHRFAPDPRRVSDQDSEGIVVKSPQLKRKSGTPDFEAESSDRATGPGFLEVSSSSLQTPGSVKGGKGSKSRLTKCSRLVPQTPVSNVVTGSPSGNNLGSAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDDDGNFSSLQAEVENLSIEERGLDEQIREMQERLRDLSENDNNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEVTEFFHDNFIMWQAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEVNGVEVPLTTILPSTSGYNEPPMTTMETEESRGKSIEMQEPDVHQMCSDLNASQDFVGGIMKIVPSEVDSDADYWLLSDADVSITDMWRTETGVEWNDLGTLHEDYPMSSIDEIANISLPLPQASPAPSAAGELPSSSNPTGS 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1229150 1234000 - Bpe022314.1 Bpe08g00221 107097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00221 488 Gene3D - 139 210 IPR036388 -
Bpe08g00221 488 MobiDBLite consensus disorder prediction 465 488 - -
Bpe08g00221 488 Gene3D - 218 338 - -
Bpe08g00221 488 MobiDBLite consensus disorder prediction 1 111 - -
Bpe08g00221 488 SUPERFAMILY E2F-DP heterodimerization region 221 338 IPR037241 -
Bpe08g00221 488 SUPERFAMILY Winged helix DNA-binding domain 143 206 IPR036390 -
Bpe08g00221 488 PANTHER TRANSCRIPTION FACTOR E2FB 19 471 - -
Bpe08g00221 488 Coils Coil 159 179 - -
Bpe08g00221 488 Coils Coil 221 255 - -
Bpe08g00221 488 MobiDBLite consensus disorder prediction 85 103 - -
Bpe08g00221 488 Pfam E2F/DP family winged-helix DNA-binding domain 145 208 IPR003316 GO:0005667|GO:0006355
Bpe08g00221 488 MobiDBLite consensus disorder prediction 1 27 - -
Bpe08g00221 488 Pfam E2F transcription factor CC-MB domain 224 337 IPR032198 GO:0046983
Bpe08g00221 488 SMART E2F_TDP_2 143 208 IPR003316 GO:0005667|GO:0006355
Bpe08g00221 488 CDD E2F_DD 222 338 IPR032198 GO:0046983
Bpe08g00221 488 PANTHER TRANSCRIPTION FACTOR E2F 19 471 IPR015633 GO:0000978|GO:0006357
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe01g00263 Bpe08g00221 CCT
Bpe01g00263 Bpe08g00221 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00263 Bpe-Chr1:1579944 Bpe08g00221 Bpe-Chr8:1229150 0 wgd
Bpe04g00633 Bpe-Chr4:4015537 Bpe08g00221 Bpe-Chr8:1229150 2.59E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21720 PF16421 E2F_CC-MB 3.90E-33 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00221 K06620 - csv:101219318 695.271