Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00221 ATGTCTGGCTCTCCGGCTCCCAACTCGTCGGAGCGTAAGCCTGAACAGATCGCTCTGTCTCAGAAGCGGCAGCTTCCTTTTTCTTCCATGAAACCGCCATTTGCTGCTTTTGGAGACTATCACCGCTTTGCACCCGACCCTCGCCGAGTCTCCGATCAAGATTCTGAGGGTATTGTGGTTAAATCTCCGCAATTAAAGAGAAAAAGTGGTACGCCAGATTTTGAAGCTGAATCTAGTGATAGAGCTACTGGTCCTGGATTCCTTGAAGTATCCAGCAGCTCTCTTCAAACACCTGGATCGGTAAAAGGAGGAAAAGGAAGCAAATCAAGGCTTACAAAGTGCAGTAGATTGGTACCTCAAACTCCTGTTTCGAACGTAGTGACAGGTTCACCTTCTGGCAATAATCTCGGATCAGCAGGTCCTTGCCGCTATGACAGTTCCCTAGGTCTCTTGACAAAAAAGTTTATCAACCTGATCAAACAAGCAGAAGATGGTATCCTCGACCTGAATAAAGCTGCAGACACATTAGAGGTGCAAAAAAGGCGAATATATGATATAACAAACGTACTTGAAGGAATTGGTCTGATAGAAAAGAAGCTGAAAAACAGAATTCAGTGGAAGGGGCTTGATGTGTCAAGGCCAGGGGATGATGATGGAAATTTTTCTAGCTTACAGGCAGAAGTCGAAAACCTTTCCATTGAGGAGCGTGGATTAGATGAACAAATAAGAGAAATGCAGGAAAGATTAAGAGATCTCAGTGAAAATGACAACAATCAGAGGTGGCTTTTTGTCACTGAAGAAGATATCAAAGGTTTGCCTTGTTTCCAGAATGAAACGTTGATAGCTATTAAGGCTCCACATGGGACTACTTTAGAAGTACCTGATCCTGACGAGGTAACTGAGTTTTTCCATGATAATTTTATTATGTGGCAGGCTGTTGACTATCCCCAAAGGAGGTACAGGATAGTCCTAAGAAGCACTATGGGTCCTATAGATGTCTACCTTGTCAGTCAATTTGAAGAAAAGTTTGAGGAGGTTAATGGTGTTGAAGTGCCTCTGACCACGATCTTACCTTCAACTTCCGGGTACAATGAGCCTCCCATGACAACAATGGAAACAGAAGAAAGTAGAGGGAAGAGTATTGAAATGCAAGAACCCGATGTTCATCAAATGTGCTCAGATCTTAATGCTTCACAGGACTTTGTGGGTGGGATTATGAAGATTGTTCCCTCGGAAGTGGACAGTGACGCTGATTACTGGCTTCTATCAGACGCTGATGTTAGCATTACTGACATGTGGAGAACTGAAACTGGTGTTGAATGGAACGATTTGGGTACACTTCATGAAGATTACCCTATGTCCAGCATTGACGAGATAGCCAATATCAGCTTGCCTCTTCCGCAGGCTTCACCAGCCCCATCTGCGGCAGGTGAATTACCTTCTAGTTCAAACCCTACTGGAAGTTGA 1467 44.1 MSGSPAPNSSERKPEQIALSQKRQLPFSSMKPPFAAFGDYHRFAPDPRRVSDQDSEGIVVKSPQLKRKSGTPDFEAESSDRATGPGFLEVSSSSLQTPGSVKGGKGSKSRLTKCSRLVPQTPVSNVVTGSPSGNNLGSAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDDDGNFSSLQAEVENLSIEERGLDEQIREMQERLRDLSENDNNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEVTEFFHDNFIMWQAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEVNGVEVPLTTILPSTSGYNEPPMTTMETEESRGKSIEMQEPDVHQMCSDLNASQDFVGGIMKIVPSEVDSDADYWLLSDADVSITDMWRTETGVEWNDLGTLHEDYPMSSIDEIANISLPLPQASPAPSAAGELPSSSNPTGS 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1229150 1234000 - Bpe022314.1 Bpe08g00221 107097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00221 488 Gene3D - 139 210 IPR036388 -
Bpe08g00221 488 MobiDBLite consensus disorder prediction 465 488 - -
Bpe08g00221 488 Gene3D - 218 338 - -
Bpe08g00221 488 MobiDBLite consensus disorder prediction 1 111 - -
Bpe08g00221 488 SUPERFAMILY E2F-DP heterodimerization region 221 338 IPR037241 -
Bpe08g00221 488 SUPERFAMILY Winged helix DNA-binding domain 143 206 IPR036390 -
Bpe08g00221 488 PANTHER TRANSCRIPTION FACTOR E2FB 19 471 - -
Bpe08g00221 488 Coils Coil 159 179 - -
Bpe08g00221 488 Coils Coil 221 255 - -
Bpe08g00221 488 MobiDBLite consensus disorder prediction 85 103 - -
Bpe08g00221 488 Pfam E2F/DP family winged-helix DNA-binding domain 145 208 IPR003316 GO:0005667|GO:0006355
Bpe08g00221 488 MobiDBLite consensus disorder prediction 1 27 - -
Bpe08g00221 488 Pfam E2F transcription factor CC-MB domain 224 337 IPR032198 GO:0046983
Bpe08g00221 488 SMART E2F_TDP_2 143 208 IPR003316 GO:0005667|GO:0006355
Bpe08g00221 488 CDD E2F_DD 222 338 IPR032198 GO:0046983
Bpe08g00221 488 PANTHER TRANSCRIPTION FACTOR E2F 19 471 IPR015633 GO:0000978|GO:0006357
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00221 K06620 E2F3; transcription factor E2F3 - csv:101219318 695.271
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe01g00263 Bpe08g00221 CCT
Bpe01g00263 Bpe08g00221 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00263 Bpe-Chr1:1579944 Bpe08g00221 Bpe-Chr8:1229150 0 wgd
Bpe04g00633 Bpe-Chr4:4015537 Bpe08g00221 Bpe-Chr8:1229150 2.59E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1278 . . Bda02g00683 Bda09g01394 Bpe01g00263 . . . . . . . . . . Cpe05g00398 . . . . . . . . Cla02g02172 Cam02g2314 Cec02g2351 Cco02g2395 Clacu02g2289 Cmu02g2221 Cre02g2545 Cone1ag0555 Cone5ag1327 . . . Csa06g02465 . . Blo08g00058 Blo14g00243 . . Bpe08g00221 . Bma07g00205 Bma11g00246 . Cmo02g01350 Cmo20g00168 Cma02g01309 Cma20g00153 Car02g01097 Car20g00133 Cpe16g00820 . Bhi10g00181 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g00870 . 80 283 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-59 226.9
Bpe08g00869 . 56 284 E2F-DP Transcription Factor Family AT5G02470 50.4 2.7e-59 225.7
Bpe04g00633 . 18 468 E2F-DP Transcription Factor Family AT2G36010 53.5 1.6e-125 446.4
Bpe08g00221 CCT,ECH 22 460 E2F-DP Transcription Factor Family AT2G36010 52.7 9.7e-118 420.6
Bpe01g00263 CCT,ECH 4 323 E2F-DP Transcription Factor Family AT2G36010 59.1 3.2e-97 352.4
Bpe08g00221 CCT,ECH 10 488 E2F-DP Transcription Factor Family AT5G22220 53.8 1.0e-108 390.6
Bpe01g00263 CCT,ECH 5 350 E2F-DP Transcription Factor Family AT5G22220 57.7 1.4e-94 343.6
Bpe04g00633 . 29 434 E2F-DP Transcription Factor Family AT5G22220 51.8 1.1e-91 334.0
Bpe08g00870 . 80 283 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-59 226.9
Bpe08g00869 . 56 284 E2F-DP Transcription Factor Family AT5G02470 50.4 2.7e-59 225.7
Bpe08g00221 CCT,ECH 10 488 E2F-DP Transcription Factor Family AT5G22220 53.8 1.0e-108 390.6
Bpe01g00263 CCT,ECH 5 350 E2F-DP Transcription Factor Family AT5G22220 57.7 1.4e-94 343.6
Bpe04g00633 . 29 434 E2F-DP Transcription Factor Family AT5G22220 51.8 1.1e-91 334.0
Bpe04g00633 . 18 468 E2F-DP Transcription Factor Family AT2G36010 53.5 1.6e-125 446.4
Bpe08g00221 CCT,ECH 22 460 E2F-DP Transcription Factor Family AT2G36010 52.7 9.7e-118 420.6
Bpe01g00263 CCT,ECH 4 323 E2F-DP Transcription Factor Family AT2G36010 59.1 3.2e-97 352.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21720 PF16421 E2F_CC-MB 3.90E-33 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00221 Bpe_Chr08 FPKM 1.603175 1.458798 4.50379 5.082841 1.646861 0.640314 1.685675 15.420379 21.508778 22.629841