Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00230 ATGTCTTTGGACTTGATGGCCTCCGAACGTGTTTGTTATGTCCACTGCAACTTCTGCAACACTGTTTTGGCGGTAATCGTTCCATACAGTAACTTGTTTACGATTGGGACAGTAAGATGTGGACATTGCGCCAATTTGCTGTCAGTGAATATGGGAACTTCCCTTCAAGTTTTTCCTCCACAGAATTCACAGAAACAGCAGGTAAGCCCTGGGGGTTCTAGTACAGACAGTGGAGGTTCATCTTCAACAACCGTCAATGTCGCTGCCTTTGAGTCTCTAGATAACGAACCACCTAGACTGGCTCCAATTCGCCCACCAGAGAAAAGACAACGCGTCCCTTCTGCTTATAACAGGTTCATTAAAGAGGAAATCCAAAGGATTAAAGCTGGTAATCCAGAAATAAGCCACAGGGAAGCTTTTAGCACAGCAGCAAAAAATGTAAGTTCTAAACATTACTTATTCTGA 465 43.66 MSLDLMASERVCYVHCNFCNTVLAVIVPYSNLFTIGTVRCGHCANLLSVNMGTSLQVFPPQNSQKQQVSPGGSSTDSGGSSSTTVNVAAFESLDNEPPRLAPIRPPEKRQRVPSAYNRFIKEEIQRIKAGNPEISHREAFSTAAKNVSSKHYLF 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1302089 1308893 - Bpe022324.1 Bpe08g00230 107106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00230 154 PANTHER PROTEIN YABBY 6-RELATED 6 148 IPR006780 GO:0007275
Bpe08g00230 154 MobiDBLite consensus disorder prediction 58 90 - -
Bpe08g00230 154 PANTHER AXIAL REGULATOR YABBY 2-RELATED 6 148 - -
Bpe08g00230 154 Pfam YABBY protein 7 147 IPR006780 GO:0007275
Bpe08g00230 154 SUPERFAMILY HMG-box 102 144 IPR036910 -
Bpe08g00230 154 MobiDBLite consensus disorder prediction 58 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00230 Bpe-Chr8:1302089 Bpe13g01156 Bpe-Chr13:17012747 1.90E-44 dispersed
Bpe01g00275 Bpe-Chr1:1654687 Bpe08g00230 Bpe-Chr8:1302089 8.36E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21721 PF04690 YABBY 1.80E-58 CL0114 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00230 K25796 - gmx:100500091 213.772