Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00232 TTGGTTTTTATACAGGGAGACATTAGAAAGTGGTTCATGAAGTCACATGACAAAGGTAATGGTGATGCTTCAAAGTCTGCAAAACCAGCGAGAGGCCCTTCAGAAAAACCTTCTTCAGCAAAGTTGCAGCCTGATAAATCAGTAGAGGAAACTCAAGGAAGTGTGAGCAGAAGGAAAACTAGCAAGTATTTTGCTGCAATAAACCAAAAGGGTGAAAATGAAGAACAGAATGAGGAACTTCTTACAAAAAGAAAGACGCAAGAGGATAGTGAGAACCTAGAGAAAAGTAAACTGTCAAAAAAAAATTGCAAAGTTGATGTTGATGACGATGATGATCTTGTCTTCTCTACCTCAAGAAAAGATTTGGTTGGCACCCCTCCAAACAAAAAGTTGAAGAGTGGCTCTGGTAAGGGAATTACTCAGAAACCTATGAATGTCGAAGAAAGTGATGAGGATGAAGATAAAAACAATGAATTACAAACAAAAAAATCTGGTGGAAGGGGACAGGGAGGCAGGGGTTCATCTGCAGCACCAGCTGGTGGAAGGGGTAGAGGCAGTGGACGTGGTGGGTTTATGAATTTTGGAGAAAGGAAAGATCCTCCGCACAAAGGGGAAAAGGAAGTCCCTGAAGGCGCTGCTGAATGTCTGGCGGGTTTAACTTTTGTGATCAGTGGAACCCTTGACAGTTTGGAACGAGAAGAGGCAGAAAATTTGATTAAACGCCATGGTGGTCGTGTAACTGGATCTGTTAGCAAGAAAACAGTTAATTCATGCTCTAAGCTTATTTTTTATTTTTTCATAGAAAATCAACTGTTAACACTTGAAAGGATTTATGTTCAGAATTATCTTCTATGTGATGAAGATATTGAGGGCAGGAAATCTTCTAAAGCTAAAGAGCTGGGTACAGCTTTTCTAACAGAGGATGGATTATTTGATATTATTCGTGCATCGAATCGTTCAAAGGTACTTTCACAAGGAAAATCTCAGAGGTCAATGGATGAGGACATTAAACCTCTGCCAAGGAAAAGTCCTCAGAAAGTAGAATTGAAAAAGGGAATCGACAATATGGTGGGTACTAATGTAACAGACAAAGGGTTTACTAAAGTTACATCCCCTGCTTTGGGTAAAAATGAGAAAACTGAACGATCTACGCTGACATGGACAGAAAAATATAGACCAAAGGTTCCAAATGACATTATTGGTAATCAGTCACTGGTCAAGCAACTTCATGACTGGTTGGCACACTGGACAGAGAACTTTCTTGATATTGGAAGCAAGAAAAAGGGCAAAAAAGTCAATGATTCTGGTAACAAAAAAGCTGTCTTATTGAGTGGAACACCTGGCATTGGGAAAACTACATCAGCAAAATTGGTTTGTCAGATGCTCGGTTTTCAAGCAATAGAGGTCAATGCCAGTGATCATCGTGGGAAAGCTGATGCTAAGATTGGAAAAGGAATTGGTGGAAGCAATGCAAATTCTGTCAAGGAACTCATTAGCAATGTGGCTCTAAATGTCAGCATGGATTGGTCAAAACACCCAAAAATGGTGTTGATAATGGACGAGGTTGACGGAATGTCGGCTGGAGATAGGGGTGGAGTTGCTGATTTAATAGCAAGCATTAAAATTTCCAAAATTCCTATTATCTGCATATGTAATGACCGCTACAGCCAGAAACTGAAGAGTCTTGTCAATTACTGTTTGCTTCTAAGCTTTCGGAAACCTACAAAACAACAGATGGCGAAGAGGTTAATGCAGGTTGCAAAAGCGGAAGGCGTTCAAGTTAATGAGATTGCTCTTGAAGAACTTGCAGAGAGAGTCAGTGGTGATATGCGAATGGCAATTAACCAGTTGCAGTACATGAGTTTGTCTTTATCAGTTATTAAGTTGTTCGGTTACAACTCTAGCAAGTTGAAGATGGATGAAAGAATTGGCCTTAGTATGAGTGATCCTGATCTAGTGCCTCTCCTCATTCAGGAAAATTACCTTAACTATAGATCAAATTTAGTTGGCAAGGATGACAATGGGATGAAACGTATGGACTGTATTGCTCGTGCTGCTGAATCCATTGCAGATGGGGATATAATTAATGTACAGATTCGAAGAAACCGTCAGTGGCAACTCTCTCAATGTGCTACACTTGCTTCTTGTATAATCCCTGCTGCATTGTTGCATGGACAAAGGGAGACACTTGAACAGGGAGAACGCAATTTTAATAGATTTGGTGGATGGTTAGGAAAAAATTCAACTATGGGTAAAAATTTGAGGCTTTTGGAGGACTTACACGTTCATGTTCTGGCCTCTCGTGAATCTAGTTCAGGAAGAGAAACCATACGAGTTGAGTATCTAAGTCTTCTTCTGAAACAGTTGACAGAGCCACTCCGTGCACTGCCAAAGGATGAAGCTGTTCAAAAAGTTGTGGAATTTATGAATGACTACTCTATTAGTCAGGAGGATTATGACACTATTGTGGAATTGTCAAAATTTCGGGGACATCCAAATCCATTGGATGGTATACAACCGGCTGTCAAGGCAGCTTTAACAAGGGCATATAAAGAAGGAAGCAAGACACGAATGGTGAGAGCTGCAGATCTGATAACGCTTCCAGGAATAAAAAAGGCACCCAAGAAGCGGATTGCAGCAATTTTGGAGCCATCTGATGAGGTATTAGGCGATGGTGATAAACTGGAAGACAGTGAAGAAGAGAGATCTTCAGACACTGAAAGCCTGGATGATGGCAGCAAAGGTGAGAAGCTGCAACAGGAACTCGAGACTCTGAATTCAAAAGGAACGAAAGTTCAGCTGGATTTGAAGGGCAAAGTAAATTCAAACACCAAGAAGTCAGCCGGGAGAGGAAAAGGTGGCTCTGAAGCTTCTTCAGCCAAGAAAGGTGGGAGTGGGAGAGCCTCAGCCCCCACTGCCAAACGAAAGAGATGA 2934 41.21 LVFIQGDIRKWFMKSHDKGNGDASKSAKPARGPSEKPSSAKLQPDKSVEETQGSVSRRKTSKYFAAINQKGENEEQNEELLTKRKTQEDSENLEKSKLSKKNCKVDVDDDDDLVFSTSRKDLVGTPPNKKLKSGSGKGITQKPMNVEESDEDEDKNNELQTKKSGGRGQGGRGSSAAPAGGRGRGSGRGGFMNFGERKDPPHKGEKEVPEGAAECLAGLTFVISGTLDSLEREEAENLIKRHGGRVTGSVSKKTVNSCSKLIFYFFIENQLLTLERIYVQNYLLCDEDIEGRKSSKAKELGTAFLTEDGLFDIIRASNRSKVLSQGKSQRSMDEDIKPLPRKSPQKVELKKGIDNMVGTNVTDKGFTKVTSPALGKNEKTERSTLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWTENFLDIGSKKKGKKVNDSGNKKAVLLSGTPGIGKTTSAKLVCQMLGFQAIEVNASDHRGKADAKIGKGIGGSNANSVKELISNVALNVSMDWSKHPKMVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVAKAEGVQVNEIALEELAERVSGDMRMAINQLQYMSLSLSVIKLFGYNSSKLKMDERIGLSMSDPDLVPLLIQENYLNYRSNLVGKDDNGMKRMDCIARAAESIADGDIINVQIRRNRQWQLSQCATLASCIIPAALLHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHVHVLASRESSSGRETIRVEYLSLLLKQLTEPLRALPKDEAVQKVVEFMNDYSISQEDYDTIVELSKFRGHPNPLDGIQPAVKAALTRAYKEGSKTRMVRAADLITLPGIKKAPKKRIAAILEPSDEVLGDGDKLEDSEEERSSDTESLDDGSKGEKLQQELETLNSKGTKVQLDLKGKVNSNTKKSAGRGKGGSEASSAKKGGSGRASAPTAKRKR 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1315721 1324065 + Bpe022326.2 Bpe08g00232 107108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00232 977 Gene3D - 629 731 - -
Bpe08g00232 977 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 23 947 - -
Bpe08g00232 977 Pfam Replication factor RFC1 C terminal domain 689 851 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Bpe08g00232 977 PANTHER REPLICATION FACTOR C SUBUNIT 1 23 947 - -
Bpe08g00232 977 CDD AAA 426 537 - -
Bpe08g00232 977 Pfam ATPase family associated with various cellular activities (AAA) 441 540 IPR003959 GO:0005524|GO:0016887
Bpe08g00232 977 MobiDBLite consensus disorder prediction 144 161 - -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 12 209 - -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 888 977 - -
Bpe08g00232 977 SUPERFAMILY BRCT domain 212 317 IPR036420 -
Bpe08g00232 977 Pfam BRCA1 C Terminus (BRCT) domain 215 313 IPR001357 -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 888 918 - -
Bpe08g00232 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 622 IPR027417 -
Bpe08g00232 977 ProSiteProfiles BRCT domain profile. 211 254 IPR001357 -
Bpe08g00232 977 SMART AAA_5 437 575 IPR003593 -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 57 71 - -
Bpe08g00232 977 CDD HLD_clamp_RFC 574 627 - -
Bpe08g00232 977 PIRSF RFC1 279 629 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Bpe08g00232 977 PIRSF RFC1 625 950 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Bpe08g00232 977 PIRSF RFC1 4 256 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Bpe08g00232 977 Gene3D BRCT domain 188 316 IPR036420 -
Bpe08g00232 977 Gene3D - 576 628 - -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 195 209 - -
Bpe08g00232 977 SMART BRCT_7 213 317 IPR001357 -
Bpe08g00232 977 SUPERFAMILY post-AAA+ oligomerization domain-like 630 765 IPR008921 GO:0003677|GO:0006260
Bpe08g00232 977 MobiDBLite consensus disorder prediction 72 117 - -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 322 344 - -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 328 344 - -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 919 949 - -
Bpe08g00232 977 Gene3D - 385 573 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00232 K10754 RFC1; replication factor C subunit 1 - qsu:112040745 1206.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00488 Bpe-Chr4:3065947 Bpe08g00232 Bpe-Chr8:1315721 1.89E-12 dispersed
Bpe08g00232 Bpe-Chr8:1315721 Bpe14g01301 Bpe-Chr14:9974561 3.01E-19 dispersed
Bpe08g00232 Bpe-Chr8:1315721 Bpe05g00631 Bpe-Chr5:20196570 5.43E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00926 . 145 829 Core DNA Replication Machinery Family AT4G14700 62.7 1.0e-249 859.8
Bpe11g00926 . 146 829 Core DNA Replication Machinery Family AT4G12620 63.5 1.5e-256 882.5
Bpe05g00056 . 7 358 Core DNA Replication Machinery Family AT2G37560 66.2 1.0e-137 486.5
Bpe02g02014 . 1 413 Core DNA Replication Machinery Family AT2G01120 61.4 2.5e-138 488.8
Bpe05g00990 . 4 534 Core DNA Replication Machinery Family AT4G29910 56.5 8.8e-171 597.0
Bpe02g02348 . 1 324 Core DNA Replication Machinery Family AT1G26840 59.6 1.3e-93 339.7
Bpe07g00465 . 1 800 Core DNA Replication Machinery Family AT1G79150 54.6 2.3e-228 788.9
Bpe08g01190 . 1 948 Core DNA Replication Machinery Family AT1G44900 75.4 0.0e+00 1364.4
Bpe01g00814 . 1 550 Core DNA Replication Machinery Family AT5G46280 81.0 1.8e-256 881.7
Bpe15g00852 CCT,ECH 1 826 Core DNA Replication Machinery Family AT2G16440 70.2 0.0e+00 1116.3
Bpe02g02150 . 936 1646 Core DNA Replication Machinery Family AT2G07690 77.2 0.0e+00 1075.8
Bpe08g00796 . 18 846 Core DNA Replication Machinery Family AT5G44635 69.9 0.0e+00 1113.6
Bpe10g00498 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1189.5
Bpe01g00096 . 40 517 Core DNA Replication Machinery Family AT2G29680 56.7 2.5e-148 522.3
Bpe01g00096 . 1 479 Core DNA Replication Machinery Family AT1G07270 54.8 2.6e-136 482.3
Bpe10g00347 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.6 9.3e-256 879.4
Bpe04g01592 . 28 854 Core DNA Replication Machinery Family AT3G09660 68.0 4.8e-308 1053.5
Bpe15g00015 . 5 626 Core DNA Replication Machinery Family AT2G14050 66.5 4.0e-236 814.3
Bpe05g00287 . 29 421 Core DNA Replication Machinery Family AT2G20980 53.5 1.8e-109 392.9
Bpe09g00382 . 1 142 Core DNA Replication Machinery Family AT1G80190 69.0 6.3e-55 210.7
Bpe05g00429 . 1 143 Core DNA Replication Machinery Family AT3G12530 71.3 7.7e-58 219.9
Bpe08g00963 . 1 145 Core DNA Replication Machinery Family AT3G12530 65.5 6.8e-54 206.8
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT1G19080 65.9 4.6e-68 254.2
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT3G55490 65.9 4.6e-68 254.2
Bpe14g01095 . 16 165 Core DNA Replication Machinery Family AT5G49010 66.7 1.3e-52 203.0
Bpe15g00335 . 1 1555 Core DNA Replication Machinery Family AT5G67100 57.9 0.0e+00 1691.0
Bpe10g00777 . 2 617 Core DNA Replication Machinery Family AT1G67630 60.9 3.9e-220 761.1
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe05g00690 . 1 457 Core DNA Replication Machinery Family AT5G41880 63.8 4.2e-176 614.4
Bpe06g00299 . 27 1143 Core DNA Replication Machinery Family AT5G63960 78.3 0.0e+00 1749.9
Bpe03g01146 . 4 442 Core DNA Replication Machinery Family AT2G42120 77.2 4.7e-204 707.2
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe12g00614 . 6 120 Core DNA Replication Machinery Family AT1G09815 60.2 6.3e-37 150.2
Bpe01g00239 . 4 2121 Core DNA Replication Machinery Family AT1G08260 68.6 0.0e+00 2874.0
Bpe01g00239 . 11 2228 Core DNA Replication Machinery Family AT2G27120 65.7 0.0e+00 2848.5
Bpe07g01082 . 7 460 Core DNA Replication Machinery Family AT5G22110 63.7 2.6e-171 598.6
Bpe08g00232 . 7 905 Core DNA Replication Machinery Family AT5G22010 62.6 3.1e-282 968.0
Bpe05g00631 . 4 334 Core DNA Replication Machinery Family AT1G63160 89.4 1.8e-171 598.6
Bpe02g00056 CCT 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 1.6e-178 622.1
Bpe04g00011 . 4 337 Core DNA Replication Machinery Family AT1G21690 80.6 1.6e-151 532.3
Bpe14g00388 CCT 1 363 Core DNA Replication Machinery Family AT1G77470 78.2 5.0e-159 557.4
Bpe13g01237 . 26 617 Core DNA Replication Machinery Family AT2G06510 68.8 2.3e-249 858.2
Bpe07g00251 . 34 688 Core DNA Replication Machinery Family AT2G06510 53.2 3.6e-202 701.4
Bpe12g00524 CCT 1 626 Core DNA Replication Machinery Family AT5G08020 66.0 2.1e-239 825.1
Bpe07g00755 CCT 1 625 Core DNA Replication Machinery Family AT5G08020 65.7 4.4e-237 817.4
Bpe12g00524 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 65.2 6.6e-236 813.5
Bpe07g00755 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 64.4 8.1e-234 806.6
Bpe07g00251 . 8 809 Core DNA Replication Machinery Family AT4G19130 52.9 1.2e-229 793.1
Bpe02g01809 . 1 396 Core DNA Replication Machinery Family AT5G26680 79.7 5.1e-184 640.6
Bpe04g01926 . 1 299 Core DNA Replication Machinery Family AT2G25100 67.6 9.8e-115 409.8
Bpe08g00178 . 46 802 Core DNA Replication Machinery Family AT1G08130 68.0 1.0e-289 992.6
Bpe08g00178 . 209 802 Core DNA Replication Machinery Family AT1G49250 66.8 7.9e-232 800.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009501 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00232 Bpe_Chr08 FPKM 1.523224 1.430342 2.445822 2.601187 0.899436 0.154544 1.068684 2.556776 2.456151 3.080994