Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00232 TTGGTTTTTATACAGGGAGACATTAGAAAGTGGTTCATGAAGTCACATGACAAAGGTAATGGTGATGCTTCAAAGTCTGCAAAACCAGCGAGAGGCCCTTCAGAAAAACCTTCTTCAGCAAAGTTGCAGCCTGATAAATCAGTAGAGGAAACTCAAGGAAGTGTGAGCAGAAGGAAAACTAGCAAGTATTTTGCTGCAATAAACCAAAAGGGTGAAAATGAAGAACAGAATGAGGAACTTCTTACAAAAAGAAAGACGCAAGAGGATAGTGAGAACCTAGAGAAAAGTAAACTGTCAAAAAAAAATTGCAAAGTTGATGTTGATGACGATGATGATCTTGTCTTCTCTACCTCAAGAAAAGATTTGGTTGGCACCCCTCCAAACAAAAAGTTGAAGAGTGGCTCTGGTAAGGGAATTACTCAGAAACCTATGAATGTCGAAGAAAGTGATGAGGATGAAGATAAAAACAATGAATTACAAACAAAAAAATCTGGTGGAAGGGGACAGGGAGGCAGGGGTTCATCTGCAGCACCAGCTGGTGGAAGGGGTAGAGGCAGTGGACGTGGTGGGTTTATGAATTTTGGAGAAAGGAAAGATCCTCCGCACAAAGGGGAAAAGGAAGTCCCTGAAGGCGCTGCTGAATGTCTGGCGGGTTTAACTTTTGTGATCAGTGGAACCCTTGACAGTTTGGAACGAGAAGAGGCAGAAAATTTGATTAAACGCCATGGTGGTCGTGTAACTGGATCTGTTAGCAAGAAAACAGTTAATTCATGCTCTAAGCTTATTTTTTATTTTTTCATAGAAAATCAACTGTTAACACTTGAAAGGATTTATGTTCAGAATTATCTTCTATGTGATGAAGATATTGAGGGCAGGAAATCTTCTAAAGCTAAAGAGCTGGGTACAGCTTTTCTAACAGAGGATGGATTATTTGATATTATTCGTGCATCGAATCGTTCAAAGGTACTTTCACAAGGAAAATCTCAGAGGTCAATGGATGAGGACATTAAACCTCTGCCAAGGAAAAGTCCTCAGAAAGTAGAATTGAAAAAGGGAATCGACAATATGGTGGGTACTAATGTAACAGACAAAGGGTTTACTAAAGTTACATCCCCTGCTTTGGGTAAAAATGAGAAAACTGAACGATCTACGCTGACATGGACAGAAAAATATAGACCAAAGGTTCCAAATGACATTATTGGTAATCAGTCACTGGTCAAGCAACTTCATGACTGGTTGGCACACTGGACAGAGAACTTTCTTGATATTGGAAGCAAGAAAAAGGGCAAAAAAGTCAATGATTCTGGTAACAAAAAAGCTGTCTTATTGAGTGGAACACCTGGCATTGGGAAAACTACATCAGCAAAATTGGTTTGTCAGATGCTCGGTTTTCAAGCAATAGAGGTCAATGCCAGTGATCATCGTGGGAAAGCTGATGCTAAGATTGGAAAAGGAATTGGTGGAAGCAATGCAAATTCTGTCAAGGAACTCATTAGCAATGTGGCTCTAAATGTCAGCATGGATTGGTCAAAACACCCAAAAATGGTGTTGATAATGGACGAGGTTGACGGAATGTCGGCTGGAGATAGGGGTGGAGTTGCTGATTTAATAGCAAGCATTAAAATTTCCAAAATTCCTATTATCTGCATATGTAATGACCGCTACAGCCAGAAACTGAAGAGTCTTGTCAATTACTGTTTGCTTCTAAGCTTTCGGAAACCTACAAAACAACAGATGGCGAAGAGGTTAATGCAGGTTGCAAAAGCGGAAGGCGTTCAAGTTAATGAGATTGCTCTTGAAGAACTTGCAGAGAGAGTCAGTGGTGATATGCGAATGGCAATTAACCAGTTGCAGTACATGAGTTTGTCTTTATCAGTTATTAAGTTGTTCGGTTACAACTCTAGCAAGTTGAAGATGGATGAAAGAATTGGCCTTAGTATGAGTGATCCTGATCTAGTGCCTCTCCTCATTCAGGAAAATTACCTTAACTATAGATCAAATTTAGTTGGCAAGGATGACAATGGGATGAAACGTATGGACTGTATTGCTCGTGCTGCTGAATCCATTGCAGATGGGGATATAATTAATGTACAGATTCGAAGAAACCGTCAGTGGCAACTCTCTCAATGTGCTACACTTGCTTCTTGTATAATCCCTGCTGCATTGTTGCATGGACAAAGGGAGACACTTGAACAGGGAGAACGCAATTTTAATAGATTTGGTGGATGGTTAGGAAAAAATTCAACTATGGGTAAAAATTTGAGGCTTTTGGAGGACTTACACGTTCATGTTCTGGCCTCTCGTGAATCTAGTTCAGGAAGAGAAACCATACGAGTTGAGTATCTAAGTCTTCTTCTGAAACAGTTGACAGAGCCACTCCGTGCACTGCCAAAGGATGAAGCTGTTCAAAAAGTTGTGGAATTTATGAATGACTACTCTATTAGTCAGGAGGATTATGACACTATTGTGGAATTGTCAAAATTTCGGGGACATCCAAATCCATTGGATGGTATACAACCGGCTGTCAAGGCAGCTTTAACAAGGGCATATAAAGAAGGAAGCAAGACACGAATGGTGAGAGCTGCAGATCTGATAACGCTTCCAGGAATAAAAAAGGCACCCAAGAAGCGGATTGCAGCAATTTTGGAGCCATCTGATGAGGTATTAGGCGATGGTGATAAACTGGAAGACAGTGAAGAAGAGAGATCTTCAGACACTGAAAGCCTGGATGATGGCAGCAAAGGTGAGAAGCTGCAACAGGAACTCGAGACTCTGAATTCAAAAGGAACGAAAGTTCAGCTGGATTTGAAGGGCAAAGTAAATTCAAACACCAAGAAGTCAGCCGGGAGAGGAAAAGGTGGCTCTGAAGCTTCTTCAGCCAAGAAAGGTGGGAGTGGGAGAGCCTCAGCCCCCACTGCCAAACGAAAGAGATGA 2934 41.21 LVFIQGDIRKWFMKSHDKGNGDASKSAKPARGPSEKPSSAKLQPDKSVEETQGSVSRRKTSKYFAAINQKGENEEQNEELLTKRKTQEDSENLEKSKLSKKNCKVDVDDDDDLVFSTSRKDLVGTPPNKKLKSGSGKGITQKPMNVEESDEDEDKNNELQTKKSGGRGQGGRGSSAAPAGGRGRGSGRGGFMNFGERKDPPHKGEKEVPEGAAECLAGLTFVISGTLDSLEREEAENLIKRHGGRVTGSVSKKTVNSCSKLIFYFFIENQLLTLERIYVQNYLLCDEDIEGRKSSKAKELGTAFLTEDGLFDIIRASNRSKVLSQGKSQRSMDEDIKPLPRKSPQKVELKKGIDNMVGTNVTDKGFTKVTSPALGKNEKTERSTLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWTENFLDIGSKKKGKKVNDSGNKKAVLLSGTPGIGKTTSAKLVCQMLGFQAIEVNASDHRGKADAKIGKGIGGSNANSVKELISNVALNVSMDWSKHPKMVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVAKAEGVQVNEIALEELAERVSGDMRMAINQLQYMSLSLSVIKLFGYNSSKLKMDERIGLSMSDPDLVPLLIQENYLNYRSNLVGKDDNGMKRMDCIARAAESIADGDIINVQIRRNRQWQLSQCATLASCIIPAALLHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHVHVLASRESSSGRETIRVEYLSLLLKQLTEPLRALPKDEAVQKVVEFMNDYSISQEDYDTIVELSKFRGHPNPLDGIQPAVKAALTRAYKEGSKTRMVRAADLITLPGIKKAPKKRIAAILEPSDEVLGDGDKLEDSEEERSSDTESLDDGSKGEKLQQELETLNSKGTKVQLDLKGKVNSNTKKSAGRGKGGSEASSAKKGGSGRASAPTAKRKR 977
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 1315721 1324065 + Bpe022326.2 Bpe08g00232 107108
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00232 977 Gene3D - 629 731 - -
Bpe08g00232 977 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 23 947 - -
Bpe08g00232 977 Pfam Replication factor RFC1 C terminal domain 689 851 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Bpe08g00232 977 PANTHER REPLICATION FACTOR C SUBUNIT 1 23 947 - -
Bpe08g00232 977 CDD AAA 426 537 - -
Bpe08g00232 977 Pfam ATPase family associated with various cellular activities (AAA) 441 540 IPR003959 GO:0005524|GO:0016887
Bpe08g00232 977 MobiDBLite consensus disorder prediction 144 161 - -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 12 209 - -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 888 977 - -
Bpe08g00232 977 SUPERFAMILY BRCT domain 212 317 IPR036420 -
Bpe08g00232 977 Pfam BRCA1 C Terminus (BRCT) domain 215 313 IPR001357 -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 888 918 - -
Bpe08g00232 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 622 IPR027417 -
Bpe08g00232 977 ProSiteProfiles BRCT domain profile. 211 254 IPR001357 -
Bpe08g00232 977 SMART AAA_5 437 575 IPR003593 -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 57 71 - -
Bpe08g00232 977 CDD HLD_clamp_RFC 574 627 - -
Bpe08g00232 977 PIRSF RFC1 279 629 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Bpe08g00232 977 PIRSF RFC1 625 950 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Bpe08g00232 977 PIRSF RFC1 4 256 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Bpe08g00232 977 Gene3D BRCT domain 188 316 IPR036420 -
Bpe08g00232 977 Gene3D - 576 628 - -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 195 209 - -
Bpe08g00232 977 SMART BRCT_7 213 317 IPR001357 -
Bpe08g00232 977 SUPERFAMILY post-AAA+ oligomerization domain-like 630 765 IPR008921 GO:0003677|GO:0006260
Bpe08g00232 977 MobiDBLite consensus disorder prediction 72 117 - -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 322 344 - -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 328 344 - -
Bpe08g00232 977 MobiDBLite consensus disorder prediction 919 949 - -
Bpe08g00232 977 Gene3D - 385 573 IPR027417 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00488 Bpe-Chr4:3065947 Bpe08g00232 Bpe-Chr8:1315721 1.89E-12 dispersed
Bpe08g00232 Bpe-Chr8:1315721 Bpe14g01301 Bpe-Chr14:9974561 3.01E-19 dispersed
Bpe08g00232 Bpe-Chr8:1315721 Bpe05g00631 Bpe-Chr5:20196570 5.43E-14 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00232 K10754 - qsu:112040745 1206.43