Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe08g00232 | TTGGTTTTTATACAGGGAGACATTAGAAAGTGGTTCATGAAGTCACATGACAAAGGTAATGGTGATGCTTCAAAGTCTGCAAAACCAGCGAGAGGCCCTTCAGAAAAACCTTCTTCAGCAAAGTTGCAGCCTGATAAATCAGTAGAGGAAACTCAAGGAAGTGTGAGCAGAAGGAAAACTAGCAAGTATTTTGCTGCAATAAACCAAAAGGGTGAAAATGAAGAACAGAATGAGGAACTTCTTACAAAAAGAAAGACGCAAGAGGATAGTGAGAACCTAGAGAAAAGTAAACTGTCAAAAAAAAATTGCAAAGTTGATGTTGATGACGATGATGATCTTGTCTTCTCTACCTCAAGAAAAGATTTGGTTGGCACCCCTCCAAACAAAAAGTTGAAGAGTGGCTCTGGTAAGGGAATTACTCAGAAACCTATGAATGTCGAAGAAAGTGATGAGGATGAAGATAAAAACAATGAATTACAAACAAAAAAATCTGGTGGAAGGGGACAGGGAGGCAGGGGTTCATCTGCAGCACCAGCTGGTGGAAGGGGTAGAGGCAGTGGACGTGGTGGGTTTATGAATTTTGGAGAAAGGAAAGATCCTCCGCACAAAGGGGAAAAGGAAGTCCCTGAAGGCGCTGCTGAATGTCTGGCGGGTTTAACTTTTGTGATCAGTGGAACCCTTGACAGTTTGGAACGAGAAGAGGCAGAAAATTTGATTAAACGCCATGGTGGTCGTGTAACTGGATCTGTTAGCAAGAAAACAGTTAATTCATGCTCTAAGCTTATTTTTTATTTTTTCATAGAAAATCAACTGTTAACACTTGAAAGGATTTATGTTCAGAATTATCTTCTATGTGATGAAGATATTGAGGGCAGGAAATCTTCTAAAGCTAAAGAGCTGGGTACAGCTTTTCTAACAGAGGATGGATTATTTGATATTATTCGTGCATCGAATCGTTCAAAGGTACTTTCACAAGGAAAATCTCAGAGGTCAATGGATGAGGACATTAAACCTCTGCCAAGGAAAAGTCCTCAGAAAGTAGAATTGAAAAAGGGAATCGACAATATGGTGGGTACTAATGTAACAGACAAAGGGTTTACTAAAGTTACATCCCCTGCTTTGGGTAAAAATGAGAAAACTGAACGATCTACGCTGACATGGACAGAAAAATATAGACCAAAGGTTCCAAATGACATTATTGGTAATCAGTCACTGGTCAAGCAACTTCATGACTGGTTGGCACACTGGACAGAGAACTTTCTTGATATTGGAAGCAAGAAAAAGGGCAAAAAAGTCAATGATTCTGGTAACAAAAAAGCTGTCTTATTGAGTGGAACACCTGGCATTGGGAAAACTACATCAGCAAAATTGGTTTGTCAGATGCTCGGTTTTCAAGCAATAGAGGTCAATGCCAGTGATCATCGTGGGAAAGCTGATGCTAAGATTGGAAAAGGAATTGGTGGAAGCAATGCAAATTCTGTCAAGGAACTCATTAGCAATGTGGCTCTAAATGTCAGCATGGATTGGTCAAAACACCCAAAAATGGTGTTGATAATGGACGAGGTTGACGGAATGTCGGCTGGAGATAGGGGTGGAGTTGCTGATTTAATAGCAAGCATTAAAATTTCCAAAATTCCTATTATCTGCATATGTAATGACCGCTACAGCCAGAAACTGAAGAGTCTTGTCAATTACTGTTTGCTTCTAAGCTTTCGGAAACCTACAAAACAACAGATGGCGAAGAGGTTAATGCAGGTTGCAAAAGCGGAAGGCGTTCAAGTTAATGAGATTGCTCTTGAAGAACTTGCAGAGAGAGTCAGTGGTGATATGCGAATGGCAATTAACCAGTTGCAGTACATGAGTTTGTCTTTATCAGTTATTAAGTTGTTCGGTTACAACTCTAGCAAGTTGAAGATGGATGAAAGAATTGGCCTTAGTATGAGTGATCCTGATCTAGTGCCTCTCCTCATTCAGGAAAATTACCTTAACTATAGATCAAATTTAGTTGGCAAGGATGACAATGGGATGAAACGTATGGACTGTATTGCTCGTGCTGCTGAATCCATTGCAGATGGGGATATAATTAATGTACAGATTCGAAGAAACCGTCAGTGGCAACTCTCTCAATGTGCTACACTTGCTTCTTGTATAATCCCTGCTGCATTGTTGCATGGACAAAGGGAGACACTTGAACAGGGAGAACGCAATTTTAATAGATTTGGTGGATGGTTAGGAAAAAATTCAACTATGGGTAAAAATTTGAGGCTTTTGGAGGACTTACACGTTCATGTTCTGGCCTCTCGTGAATCTAGTTCAGGAAGAGAAACCATACGAGTTGAGTATCTAAGTCTTCTTCTGAAACAGTTGACAGAGCCACTCCGTGCACTGCCAAAGGATGAAGCTGTTCAAAAAGTTGTGGAATTTATGAATGACTACTCTATTAGTCAGGAGGATTATGACACTATTGTGGAATTGTCAAAATTTCGGGGACATCCAAATCCATTGGATGGTATACAACCGGCTGTCAAGGCAGCTTTAACAAGGGCATATAAAGAAGGAAGCAAGACACGAATGGTGAGAGCTGCAGATCTGATAACGCTTCCAGGAATAAAAAAGGCACCCAAGAAGCGGATTGCAGCAATTTTGGAGCCATCTGATGAGGTATTAGGCGATGGTGATAAACTGGAAGACAGTGAAGAAGAGAGATCTTCAGACACTGAAAGCCTGGATGATGGCAGCAAAGGTGAGAAGCTGCAACAGGAACTCGAGACTCTGAATTCAAAAGGAACGAAAGTTCAGCTGGATTTGAAGGGCAAAGTAAATTCAAACACCAAGAAGTCAGCCGGGAGAGGAAAAGGTGGCTCTGAAGCTTCTTCAGCCAAGAAAGGTGGGAGTGGGAGAGCCTCAGCCCCCACTGCCAAACGAAAGAGATGA | 2934 | 41.21 | LVFIQGDIRKWFMKSHDKGNGDASKSAKPARGPSEKPSSAKLQPDKSVEETQGSVSRRKTSKYFAAINQKGENEEQNEELLTKRKTQEDSENLEKSKLSKKNCKVDVDDDDDLVFSTSRKDLVGTPPNKKLKSGSGKGITQKPMNVEESDEDEDKNNELQTKKSGGRGQGGRGSSAAPAGGRGRGSGRGGFMNFGERKDPPHKGEKEVPEGAAECLAGLTFVISGTLDSLEREEAENLIKRHGGRVTGSVSKKTVNSCSKLIFYFFIENQLLTLERIYVQNYLLCDEDIEGRKSSKAKELGTAFLTEDGLFDIIRASNRSKVLSQGKSQRSMDEDIKPLPRKSPQKVELKKGIDNMVGTNVTDKGFTKVTSPALGKNEKTERSTLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWTENFLDIGSKKKGKKVNDSGNKKAVLLSGTPGIGKTTSAKLVCQMLGFQAIEVNASDHRGKADAKIGKGIGGSNANSVKELISNVALNVSMDWSKHPKMVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVAKAEGVQVNEIALEELAERVSGDMRMAINQLQYMSLSLSVIKLFGYNSSKLKMDERIGLSMSDPDLVPLLIQENYLNYRSNLVGKDDNGMKRMDCIARAAESIADGDIINVQIRRNRQWQLSQCATLASCIIPAALLHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHVHVLASRESSSGRETIRVEYLSLLLKQLTEPLRALPKDEAVQKVVEFMNDYSISQEDYDTIVELSKFRGHPNPLDGIQPAVKAALTRAYKEGSKTRMVRAADLITLPGIKKAPKKRIAAILEPSDEVLGDGDKLEDSEEERSSDTESLDDGSKGEKLQQELETLNSKGTKVQLDLKGKVNSNTKKSAGRGKGGSEASSAKKGGSGRASAPTAKRKR | 977 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 1315721 | 1324065 | + | Bpe022326.2 | Bpe08g00232 | 107108 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe08g00232 | 977 | Gene3D | - | 629 | 731 | - | - | |
| Bpe08g00232 | 977 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 23 | 947 | - | - | |
| Bpe08g00232 | 977 | Pfam | Replication factor RFC1 C terminal domain | 689 | 851 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
| Bpe08g00232 | 977 | PANTHER | REPLICATION FACTOR C SUBUNIT 1 | 23 | 947 | - | - | |
| Bpe08g00232 | 977 | CDD | AAA | 426 | 537 | - | - | |
| Bpe08g00232 | 977 | Pfam | ATPase family associated with various cellular activities (AAA) | 441 | 540 | IPR003959 | GO:0005524|GO:0016887 | |
| Bpe08g00232 | 977 | MobiDBLite | consensus disorder prediction | 144 | 161 | - | - | |
| Bpe08g00232 | 977 | MobiDBLite | consensus disorder prediction | 12 | 209 | - | - | |
| Bpe08g00232 | 977 | MobiDBLite | consensus disorder prediction | 888 | 977 | - | - | |
| Bpe08g00232 | 977 | SUPERFAMILY | BRCT domain | 212 | 317 | IPR036420 | - | |
| Bpe08g00232 | 977 | Pfam | BRCA1 C Terminus (BRCT) domain | 215 | 313 | IPR001357 | - | |
| Bpe08g00232 | 977 | MobiDBLite | consensus disorder prediction | 888 | 918 | - | - | |
| Bpe08g00232 | 977 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 386 | 622 | IPR027417 | - | |
| Bpe08g00232 | 977 | ProSiteProfiles | BRCT domain profile. | 211 | 254 | IPR001357 | - | |
| Bpe08g00232 | 977 | SMART | AAA_5 | 437 | 575 | IPR003593 | - | |
| Bpe08g00232 | 977 | MobiDBLite | consensus disorder prediction | 57 | 71 | - | - | |
| Bpe08g00232 | 977 | CDD | HLD_clamp_RFC | 574 | 627 | - | - | |
| Bpe08g00232 | 977 | PIRSF | RFC1 | 279 | 629 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Bpe08g00232 | 977 | PIRSF | RFC1 | 625 | 950 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Bpe08g00232 | 977 | PIRSF | RFC1 | 4 | 256 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Bpe08g00232 | 977 | Gene3D | BRCT domain | 188 | 316 | IPR036420 | - | |
| Bpe08g00232 | 977 | Gene3D | - | 576 | 628 | - | - | |
| Bpe08g00232 | 977 | MobiDBLite | consensus disorder prediction | 195 | 209 | - | - | |
| Bpe08g00232 | 977 | SMART | BRCT_7 | 213 | 317 | IPR001357 | - | |
| Bpe08g00232 | 977 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 630 | 765 | IPR008921 | GO:0003677|GO:0006260 | |
| Bpe08g00232 | 977 | MobiDBLite | consensus disorder prediction | 72 | 117 | - | - | |
| Bpe08g00232 | 977 | MobiDBLite | consensus disorder prediction | 322 | 344 | - | - | |
| Bpe08g00232 | 977 | MobiDBLite | consensus disorder prediction | 328 | 344 | - | - | |
| Bpe08g00232 | 977 | MobiDBLite | consensus disorder prediction | 919 | 949 | - | - | |
| Bpe08g00232 | 977 | Gene3D | - | 385 | 573 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe04g00488 | Bpe-Chr4:3065947 | Bpe08g00232 | Bpe-Chr8:1315721 | 1.89E-12 | dispersed | |
| Bpe08g00232 | Bpe-Chr8:1315721 | Bpe14g01301 | Bpe-Chr14:9974561 | 3.01E-19 | dispersed | |
| Bpe08g00232 | Bpe-Chr8:1315721 | Bpe05g00631 | Bpe-Chr5:20196570 | 5.43E-14 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe08g00232 | K10754 | - | qsu:112040745 | 1206.43 |