Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00276 ATGCAGCCAAAGCCAGAAAATGTAAATCAATTAGAATCAGATCTACATTCAATCCATCCAATCAGTAATTATACTGAGCCATGGTGGCGTGGTATGGGGTATAATCCTATCTCTGCACAGATGATGGGGAGAACTTCAATTCCAAACTCTTTGGAGCACACCGATGGTAATTCAAAGTCCAGTGATCACCAGTCTATGTCAGATAACGATCTGAACAAAGAAGATGATGGATTTATTTTTTACCCAGTTACAGCTTCTGGTTTTGGAAAAGAACAACAAAATTGTCAGCATGTTGTTCCCGCTATCCCCATGATGCACAGTGAATCTAACAGCCAACGTCCTCAGCTGGAGCTTATTGGTCACTCTATTGCGAGTGCACCAAATCCATATCAGGATTCATATGTGGGAGGAATCGTGGCCACTTATGGGCATCAGCCTCTGGTTTATCCTCCTTTTCTTGGAATGCCACATGCTAGAATGCCATTACCTCTTGAGATGGCACAAGAGCCTGTCTTTGTGAATGCCAAACAATACCAGGGGATTATAAGGCGTAGACAAGCTCGTGCTAAAGCTGAGGTCGAGAAGAAACTGATAAAAGTTAGAAAGGTACAAAGCCTTGTATTTATTGGATGCTTTGGGCTTTCTAATCTTTCTCATTTACAGCCCTATCTTCATGAATCTCGCCACCAGCATGCAATGAGAAGACCAAGAGGCAGCGGAGGACGTTTTGCGAAGAAAAGCAAAATGGATGCTTTGAACTGTCCAGCAGAAGAAAGGGATACCACTTCTGGTTCTCCCCTCGTCACACTCTGCTAG 816 43.5 MQPKPENVNQLESDLHSIHPISNYTEPWWRGMGYNPISAQMMGRTSIPNSLEHTDGNSKSSDHQSMSDNDLNKEDDGFIFYPVTASGFGKEQQNCQHVVPAIPMMHSESNSQRPQLELIGHSIASAPNPYQDSYVGGIVATYGHQPLVYPPFLGMPHARMPLPLEMAQEPVFVNAKQYQGIIRRRQARAKAEVEKKLIKVRKVQSLVFIGCFGLSNLSHLQPYLHESRHQHAMRRPRGSGGRFAKKSKMDALNCPAEERDTTSGSPLVTLC 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1632726 1635647 + Bpe022373.2 Bpe08g00276 107152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00276 271 MobiDBLite consensus disorder prediction 47 65 - -
Bpe08g00276 271 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 41 202 - -
Bpe08g00276 271 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 221 251 IPR001289 GO:0003700|GO:0006355
Bpe08g00276 271 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 243 IPR001289 GO:0003700|GO:0006355
Bpe08g00276 271 ProSitePatterns NF-YA/HAP2 subunit signature. 172 192 IPR018362 GO:0003677|GO:0016602
Bpe08g00276 271 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 221 251 - -
Bpe08g00276 271 SMART cbf3 166 246 IPR001289 GO:0003700|GO:0006355
Bpe08g00276 271 Gene3D - 167 248 - -
Bpe08g00276 271 MobiDBLite consensus disorder prediction 47 73 - -
Bpe08g00276 271 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 41 202 IPR001289 GO:0003700|GO:0006355
Bpe08g00276 271 MobiDBLite consensus disorder prediction 228 271 - -
Bpe08g00276 271 ProSiteProfiles NF-YA/HAP2 family profile. 167 246 IPR001289 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe01g00318 Bpe08g00276 CCT
Bpe08g01208 Bpe08g00276 CCT
Bpe01g00318 Bpe08g00276 ECH
Bpe08g00276 Bpe08g01208 ECH
Bpe08g01208 Bpe08g00276 ECH
Bpe08g00276 Bpe11g00922 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00547 Bpe-Chr4:3473672 Bpe08g00276 Bpe-Chr8:1632726 2.08E-40 dispersed
Bpe08g00276 Bpe-Chr8:1632726 Bpe08g00441 Bpe-Chr8:2786870 1.10E-31 dispersed
Bpe01g00318 Bpe-Chr1:1970179 Bpe08g00276 Bpe-Chr8:1632726 6.51E-74 wgd
Bpe11g00922 Bpe-Chr11:6817660 Bpe08g00276 Bpe-Chr8:1632726 1.47E-73 wgd
Bpe04g01485 Bpe-Chr4:21385317 Bpe08g00276 Bpe-Chr8:1632726 3.87E-18 wgd
Bpe08g00276 Bpe-Chr8:1632726 Bpe08g01208 Bpe-Chr8:13749015 1.74E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21726 PF02045 CBFB_NFYA 1.80E-25 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00276 K08064 - jre:108998712 295.819