Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe08g00276 | ATGCAGCCAAAGCCAGAAAATGTAAATCAATTAGAATCAGATCTACATTCAATCCATCCAATCAGTAATTATACTGAGCCATGGTGGCGTGGTATGGGGTATAATCCTATCTCTGCACAGATGATGGGGAGAACTTCAATTCCAAACTCTTTGGAGCACACCGATGGTAATTCAAAGTCCAGTGATCACCAGTCTATGTCAGATAACGATCTGAACAAAGAAGATGATGGATTTATTTTTTACCCAGTTACAGCTTCTGGTTTTGGAAAAGAACAACAAAATTGTCAGCATGTTGTTCCCGCTATCCCCATGATGCACAGTGAATCTAACAGCCAACGTCCTCAGCTGGAGCTTATTGGTCACTCTATTGCGAGTGCACCAAATCCATATCAGGATTCATATGTGGGAGGAATCGTGGCCACTTATGGGCATCAGCCTCTGGTTTATCCTCCTTTTCTTGGAATGCCACATGCTAGAATGCCATTACCTCTTGAGATGGCACAAGAGCCTGTCTTTGTGAATGCCAAACAATACCAGGGGATTATAAGGCGTAGACAAGCTCGTGCTAAAGCTGAGGTCGAGAAGAAACTGATAAAAGTTAGAAAGGTACAAAGCCTTGTATTTATTGGATGCTTTGGGCTTTCTAATCTTTCTCATTTACAGCCCTATCTTCATGAATCTCGCCACCAGCATGCAATGAGAAGACCAAGAGGCAGCGGAGGACGTTTTGCGAAGAAAAGCAAAATGGATGCTTTGAACTGTCCAGCAGAAGAAAGGGATACCACTTCTGGTTCTCCCCTCGTCACACTCTGCTAG | 816 | 43.5 | MQPKPENVNQLESDLHSIHPISNYTEPWWRGMGYNPISAQMMGRTSIPNSLEHTDGNSKSSDHQSMSDNDLNKEDDGFIFYPVTASGFGKEQQNCQHVVPAIPMMHSESNSQRPQLELIGHSIASAPNPYQDSYVGGIVATYGHQPLVYPPFLGMPHARMPLPLEMAQEPVFVNAKQYQGIIRRRQARAKAEVEKKLIKVRKVQSLVFIGCFGLSNLSHLQPYLHESRHQHAMRRPRGSGGRFAKKSKMDALNCPAEERDTTSGSPLVTLC | 271 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1632726 | 1635647 | + | Bpe022373.2 | Bpe08g00276 | 107152 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe08g00276 | 271 | MobiDBLite | consensus disorder prediction | 47 | 65 | - | - | |
Bpe08g00276 | 271 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 | 41 | 202 | - | - | |
Bpe08g00276 | 271 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 221 | 251 | IPR001289 | GO:0003700|GO:0006355 | |
Bpe08g00276 | 271 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 169 | 243 | IPR001289 | GO:0003700|GO:0006355 | |
Bpe08g00276 | 271 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 172 | 192 | IPR018362 | GO:0003677|GO:0016602 | |
Bpe08g00276 | 271 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 | 221 | 251 | - | - | |
Bpe08g00276 | 271 | SMART | cbf3 | 166 | 246 | IPR001289 | GO:0003700|GO:0006355 | |
Bpe08g00276 | 271 | Gene3D | - | 167 | 248 | - | - | |
Bpe08g00276 | 271 | MobiDBLite | consensus disorder prediction | 47 | 73 | - | - | |
Bpe08g00276 | 271 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 41 | 202 | IPR001289 | GO:0003700|GO:0006355 | |
Bpe08g00276 | 271 | MobiDBLite | consensus disorder prediction | 228 | 271 | - | - | |
Bpe08g00276 | 271 | ProSiteProfiles | NF-YA/HAP2 family profile. | 167 | 246 | IPR001289 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe01g00318 | Bpe08g00276 | CCT | |
Bpe08g01208 | Bpe08g00276 | CCT | |
Bpe01g00318 | Bpe08g00276 | ECH | |
Bpe08g00276 | Bpe08g01208 | ECH | |
Bpe08g01208 | Bpe08g00276 | ECH | |
Bpe08g00276 | Bpe11g00922 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe04g00547 | Bpe-Chr4:3473672 | Bpe08g00276 | Bpe-Chr8:1632726 | 2.08E-40 | dispersed | |
Bpe08g00276 | Bpe-Chr8:1632726 | Bpe08g00441 | Bpe-Chr8:2786870 | 1.10E-31 | dispersed | |
Bpe01g00318 | Bpe-Chr1:1970179 | Bpe08g00276 | Bpe-Chr8:1632726 | 6.51E-74 | wgd | |
Bpe11g00922 | Bpe-Chr11:6817660 | Bpe08g00276 | Bpe-Chr8:1632726 | 1.47E-73 | wgd | |
Bpe04g01485 | Bpe-Chr4:21385317 | Bpe08g00276 | Bpe-Chr8:1632726 | 3.87E-18 | wgd | |
Bpe08g00276 | Bpe-Chr8:1632726 | Bpe08g01208 | Bpe-Chr8:13749015 | 1.74E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21726 | PF02045 | CBFB_NFYA | 1.80E-25 | No_clan | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe08g00276 | K08064 | - | jre:108998712 | 295.819 |