Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00306 ATGGCAGCTTCTCTCTCTTCCGTGGTACTGGTCGTAGTACTGATGCATCTTCTAGCACCAGCCCTCGTTTCATCTTCCCCAGTTCAAGACCCTGAATTAGTCGTAGAAGAAGTTCTTACGAGCATCAACAATGCCTCCATTAGCAGAAGAAATCTAGCTTCGTGTAGTACAGGCAACCCCATTGATGACTGCTGGAGGTGCGACTCCAATTGGGCGACTAACCGGAAGCGTCTAGCTGATTGTGCCATCGGCTTCGGCAAGGGGGCGATCGGCGGGAGAAATGGAAAGATTTACGTCGTCACTGATCCAACCGACAAAGACCTCGTAAACCCTAAACCAGGCACTCTCCGTTACGCGGTCATACAAGACGAGCCCCTTTGGATCATCTTCAGTCGAGATATGGTCATCAAGCTAAAAGCAGAGCTCATCATGAACTCCTTCAAGACCATCGACGGCCGCGGAGCCAACGTCCACATCGCCGGCGGACCTTGCATTACGATTCAGTACGTGACGAACATCATAATTCACGGAATCAGCATTCACGATTGCAAGGTCGGAGGGAACACCTACGTGAGAGACTCGCCGCATCATTACGGCTGGCGGACGTTGTCAGATGGAGATGGGATTTCGATCTTCGGAGGAAGCTATGTTTGGGTGGACCATTGCTCTCTGTCTAACTGCAAGGACGGTCTGATAGATGCCATTCGTGGATCGACAGCCATAACCATATCTAACAATTACATGACCCATCACAACAAAGTCATGCTCTTAGGCCACAGCGATTCCTACAAACAAGACAAGAACATGCAAGTCACCATAGCTTTCAACCATTTCGGAGAAGGACTAATCCAGAGAATGCCAAGATGCAGACTTGGGTATTTCCACGTCGTGAATAATGACTACACTCATTGGGTCATGTACGCCATCGGCGGTAGCGCAGCTCCGACGATCAACAGCCAAGGCAACAGATTTCTAGCCCCAGACGACGCTGTCCACAAAGAGGTAACGAAGCACGAGAACACAGCGGAGAGAGTATGGAGAAACTGGAACTGGAGATCGCAGGGAGACTTGATGTTAAACGGTGCGTTTTTCACGAGATCTGGATCGGCAGGGTCCTCCAGCTACGCCAAGGCGTCGAGCGTGAGCGCAAGACCGGTGTCGCTAGTGAGATCACTCACCGCCGGCGCCGGCGCCCTTAGATGCAAAAAGGGTTCTCTTTGCTGA 1224 51.31 MAASLSSVVLVVVLMHLLAPALVSSSPVQDPELVVEEVLTSINNASISRRNLASCSTGNPIDDCWRCDSNWATNRKRLADCAIGFGKGAIGGRNGKIYVVTDPTDKDLVNPKPGTLRYAVIQDEPLWIIFSRDMVIKLKAELIMNSFKTIDGRGANVHIAGGPCITIQYVTNIIIHGISIHDCKVGGNTYVRDSPHHYGWRTLSDGDGISIFGGSYVWVDHCSLSNCKDGLIDAIRGSTAITISNNYMTHHNKVMLLGHSDSYKQDKNMQVTIAFNHFGEGLIQRMPRCRLGYFHVVNNDYTHWVMYAIGGSAAPTINSQGNRFLAPDDAVHKEVTKHENTAERVWRNWNWRSQGDLMLNGAFFTRSGSAGSSSYAKASSVSARPVSLVRSLTAGAGALRCKKGSLC 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1832348 1833860 - Bpe022402.1 Bpe08g00306 107182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00306 407 SMART amb_all 133 330 IPR002022 -
Bpe08g00306 407 Pfam Pectate lyase 141 324 IPR002022 -
Bpe08g00306 407 PANTHER PECTATE LYASE 11 404 - -
Bpe08g00306 407 Gene3D - 58 400 IPR012334 -
Bpe08g00306 407 SUPERFAMILY Pectin lyase-like 42 401 IPR011050 -
Bpe08g00306 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Bpe08g00306 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Bpe08g00306 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Bpe08g00306 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Bpe08g00306 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Bpe08g00306 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Bpe08g00306 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Bpe08g00306 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Bpe08g00306 407 PANTHER PECTATE LYASE 18-RELATED 11 404 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00306 Bpe-Chr8:1832348 Bpe15g01045 Bpe-Chr15:19798888 1.12E-177 dispersed
Bpe14g00191 Bpe-Chr14:2222322 Bpe08g00306 Bpe-Chr8:1832348 6.13E-166 dispersed
Bpe02g00950 Bpe-Chr2:8589691 Bpe08g00306 Bpe-Chr8:1832348 1.20E-146 transposed
Bpe09g00408 Bpe-Chr9:6572920 Bpe08g00306 Bpe-Chr8:1832348 0 transposed
Bpe09g00529 Bpe-Chr9:14060114 Bpe08g00306 Bpe-Chr8:1832348 0 transposed
Bpe14g01295 Bpe-Chr14:9892444 Bpe08g00306 Bpe-Chr8:1832348 0 transposed
Bpe15g00661 Bpe-Chr15:17324303 Bpe08g00306 Bpe-Chr8:1832348 0 transposed
Bpe01g00340 Bpe-Chr1:2143751 Bpe08g00306 Bpe-Chr8:1832348 5.23E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00306 K01728 - zju:107428464 664.455