Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00334 ATGGCTAGTCGCAACCAGAACAGGCCTCCTCGAAGTCCCTCCCCGAAAAAAGATGGAATCGATCTAGTTCCATTAGACAAACGAAGGAAGATAGGATTGGGAAGATTGACCGGACCTCCGGCTATTGGACGTACGAGACAGGCTTTTTCTGTGGTTAGTAATAGACAAGAACCAGTGGTTGGGAGTGATGCTGGAACAAACGAGGGATCAGAGTGTGGTAATGTTGAATTCACCAATGAAGAGGTTGATGCATTACTAAACGAGAAGTTTAAGGGAAAAAAGTTTGATTTCAAGGGGGTAGTTTGTAAAAATCATTTACGCTTGTGGCAGGGGAAACTTGAGCAAGTTACTGAGCACAGTAAACGGCTCAAGCTCTGCATCAAGTGGTTTCAACAAGCCAAAGAAACCCAACAGCTTGAGGAAGAGAAGTTACGAAATTCTTTAGAGTCTGCTGAGAAAAAATGCACTGAAACCGACTTGGAGATGAGGAATAGAATACAAGAGTTCACTTCCAGTATCTTGGAATTGCAAAAAACTATTGAATCATTAGAAGAGAAACTTGCAAAGGAGGAATCAGATAAATTGAGTGCACTTGAATGTCATAGAAGAGAAAAAGAAGCAAGACTTGGAGCCGAAAAGTTGCAAGCTTCTCTCTCAGAGGAGCTTAAGAAGATTCGGCAAGAAAAATGTGCTGCAGAGAGGAGGGTTGCATCAAATGAAGATTTGTATAAACGAGCTCAAGAGTACAACATCAGCTTGCAACAGTACAATAGCAAACTTCAAGCTGACCTTGATACAACAAACGAGTCATTGAAAAGGGTGGAAATGGAAAAATTAGCGATTGTAGACAATCTCAGTAATTTAAGAGGACACAACAAAATATTGCAAGAACAATTATCCTCTTTGAAAGCTTTACAAGAGGAGGCAGTAAAGCAGAAAGAAGCGTCAATAAAAGAACTCAAATGCGTCCAAGGAGAAGTACAACATCTGAGAAATGATCGAGACCATCAAGTGGCTCAGGTGCAAGCTTTAAGAGCTGATATAGTGATGTATCAAGAACGTACTGGTAAGTCACTCGAACAGTTGGAAAGCGTGGTGATAAAATCTGATGCATTGGAGCTTGTCGATTTATCTGCATCAGAATTAAAAACAGAATATGAGCAACAGAAGAACATAATTTGCGAATTACAAAATCGAATTGCGGATTTTGAGTGTCAAGTAATTGAAGGAGAAAAACTGAGGAAAAGCCTACATAATACCATTCTGGAGCTAAAAGGAAATATTCGTGTGTTTTGTCGAGTGCGCCCGTTGCTACCAGATGATGGAATTGGATCAGAAAGCACAGCCGTCTCTTATCCAACATCAGCGGAAACTTTGGGTCGGGGCGTAGATTTGATTCAAAGTGGACAAAAATATCCTTTTACATTTGATCAAGTGTTTACTCATGAGGCATCCCAACAGGATGTTTTCGTAGAAATCTCTCAACTTGTGCAGAGTGCACTTGATGGGTATAAGGTGTGCATATTTGCATATGGACAAACAGGATCAGGTAAAACTTATACTATGATGGGCAAACCAGAGCAAAAGGGGTTGATTCCACTGTCATTAGAACAAATATTTCAATGTAGTCAGTCACTTGAAACTCAAGGGTGGAAATATCAAATGCAGGCATCTATGTTAGAGATTTACAACGAGACAATCCGTGATTTATTGTCACCAAACAGGCCGAATGGGGAAACAAGGACAGATGTTAATGCTCTGGCGAAGCAATACACCATTAAACATGATGCAAATGGAAATACCTATGTTTCAGATCTTACTATTGTTGACGTATGTAGCATTCGAGAGGTCTCATCTCTCTTGCAACAGGCTGCAAACAGTAGGTCTGTGGGCAAGACTCAAATGAACGAGCAGTCATCGAGAAGTCACTTCGTATTTACATTGCGTATATCAGGAATAAACGAGAATAAACAATTTTTCTATTTTATGTCTTTGCAGAGTACCGAGCAGCAAGTGCAAGGGGTGCTAAACCTCATCGACCTTGCAGGAAGTGAACGACTCTCCAAAAGTGGGGCGACAGGGGACAGATTAAAGGAAACACAGGCCATAAATAAAAGTCTATCATCGTTGGGAGATGTAATATTTGCACTAGCCAAGAAGGAAGATCACATTCCCTATCGAAACTCAAAACTGACGTATCTTCTCCAGCCATGTCTTGGAGGTGATTCAAAAAGTTTAATGATCGTGAACATTTCCCCGGACCCATCGTCCGCGGGCGAGACCCTTTGCTCCCTTCGATTTGCTGCAAGAGTGAATGCTTGCGAAATAGGAGTTCCTCGGCGCCAAACATCCGTGCGTCCCTGA 2364 41.5 MASRNQNRPPRSPSPKKDGIDLVPLDKRRKIGLGRLTGPPAIGRTRQAFSVVSNRQEPVVGSDAGTNEGSECGNVEFTNEEVDALLNEKFKGKKFDFKGVVCKNHLRLWQGKLEQVTEHSKRLKLCIKWFQQAKETQQLEEEKLRNSLESAEKKCTETDLEMRNRIQEFTSSILELQKTIESLEEKLAKEESDKLSALECHRREKEARLGAEKLQASLSEELKKIRQEKCAAERRVASNEDLYKRAQEYNISLQQYNSKLQADLDTTNESLKRVEMEKLAIVDNLSNLRGHNKILQEQLSSLKALQEEAVKQKEASIKELKCVQGEVQHLRNDRDHQVAQVQALRADIVMYQERTGKSLEQLESVVIKSDALELVDLSASELKTEYEQQKNIICELQNRIADFECQVIEGEKLRKSLHNTILELKGNIRVFCRVRPLLPDDGIGSESTAVSYPTSAETLGRGVDLIQSGQKYPFTFDQVFTHEASQQDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEQKGLIPLSLEQIFQCSQSLETQGWKYQMQASMLEIYNETIRDLLSPNRPNGETRTDVNALAKQYTIKHDANGNTYVSDLTIVDVCSIREVSSLLQQAANSRSVGKTQMNEQSSRSHFVFTLRISGINENKQFFYFMSLQSTEQQVQGVLNLIDLAGSERLSKSGATGDRLKETQAINKSLSSLGDVIFALAKKEDHIPYRNSKLTYLLQPCLGGDSKSLMIVNISPDPSSAGETLCSLRFAARVNACEIGVPRRQTSVRP 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1980252 1985220 - Bpe022428.1 Bpe08g00334 107210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00334 787 Coils Coil 239 277 - -
Bpe08g00334 787 Pfam Kinesin motor domain 433 772 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe08g00334 787 Coils Coil 134 161 - -
Bpe08g00334 787 Coils Coil 166 208 - -
Bpe08g00334 787 PRINTS Kinesin heavy chain signature 724 745 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe08g00334 787 PRINTS Kinesin heavy chain signature 675 693 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe08g00334 787 PRINTS Kinesin heavy chain signature 633 650 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe08g00334 787 PRINTS Kinesin heavy chain signature 503 524 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe08g00334 787 ProSitePatterns Kinesin motor domain signature. 674 685 IPR019821 GO:0003777|GO:0005524|GO:0007018
Bpe08g00334 787 MobiDBLite consensus disorder prediction 1 24 - -
Bpe08g00334 787 PANTHER KINESIN-LIKE PROTEIN KLP-3 375 786 - -
Bpe08g00334 787 PANTHER KINESIN-LIKE PROTEIN KLP-3 3 373 - -
Bpe08g00334 787 Coils Coil 285 315 - -
Bpe08g00334 787 MobiDBLite consensus disorder prediction 53 73 - -
Bpe08g00334 787 SMART kinesin_4 425 782 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe08g00334 787 ProSiteProfiles Kinesin motor domain profile. 427 774 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe08g00334 787 PANTHER KINESIN-LIKE PROTEIN 375 786 - -
Bpe08g00334 787 PANTHER KINESIN-LIKE PROTEIN 3 373 - -
Bpe08g00334 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 774 IPR027417 -
Bpe08g00334 787 Gene3D Kinesin motor domain 369 776 IPR036961 -
Bpe08g00334 787 CDD KISc_C_terminal 425 776 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00334 K10405 KIFC1; kinesin family member C1 - jre:109011553 1092.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00334 Bpe-Chr8:1980252 Bpe11g00523 Bpe-Chr11:4068526 0 dispersed
Bpe08g00334 Bpe-Chr8:1980252 Bpe07g00107 Bpe-Chr7:763497 1.95E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g6 . . . . . . . . Cmo10g01101 . Cma10g01045 . . . . . Cpe18g00084 . . . . . . . . . . . . . . . . . . . . . . . Blo14g00340 . . Bpe08g00334 . Bma07g00328 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006216 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00334 Bpe_Chr08 FPKM 2.081321 2.008139 3.123553 2.9105 3.129571 2.895503 3.852655 4.693235 4.335038 4.09064