Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00340 ATGTATGGACATGTTGCGAAGTTGGCTGAGGAGATGGTGAAAGGAGCTTCATCAGTTGAAGAAGTAGATGCAAAACTATGGCAGGTACCTGAGACGCTGACCGAAGAGGTTCTTGGTAAGATGCATGCACCGCTAAAGCTTGACGTTCCGATCATTACGCCGGACGAACTGGAAGAGGCCGATGGCCTACTTTTTGGTTTTCCGACGAGATTTGGAATGATGTGTTCTCAGTTCAAATCATTTTTTGATGCAACTGGTGGGTTATGGAGAACACAATCCCTCGCCGGAAAGCCTGCCGGAATTTTCTACAGCACTGGTTCTCAAGGAGGTGGACAAGAGACCACACCATTGACGGCTATTACTCAGCTGGCTCACCATGGGATGATCTTCGTTCCCATCGGATATACGTTCGGAGCTGGAATGTTTGAGTTAGGGGCAGTCAAAGGAGGTAGCCCTTACGGAGCTGGAACTTTCGCCGGTGATGGTTCGAGACAGCCGTCGGAGCTTGAGTTGGAGCAAGCTTTTCACCAGGGGAAGTACTTTGCTGGAATTGCAAAGAAGTTGAAAGGGTCTGACTGA 579 49.22 MYGHVAKLAEEMVKGASSVEEVDAKLWQVPETLTEEVLGKMHAPLKLDVPIITPDELEEADGLLFGFPTRFGMMCSQFKSFFDATGGLWRTQSLAGKPAGIFYSTGSQGGGQETTPLTAITQLAHHGMIFVPIGYTFGAGMFELGAVKGGSPYGAGTFAGDGSRQPSELELEQAFHQGKYFAGIAKKLKGSD 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2024600 2025407 - Bpe022434.1 Bpe08g00340 107216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00340 192 ProSiteProfiles Flavodoxin-like domain profile. 1 181 IPR008254 GO:0010181
Bpe08g00340 192 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 1 188 IPR010089 GO:0003955|GO:0010181
Bpe08g00340 192 Gene3D - 1 190 IPR029039 -
Bpe08g00340 192 PANTHER FLAVOPROTEIN WRBA, FLAVOPROTEIN-LIKE DOMAIN PROTEIN-RELATED 1 191 - -
Bpe08g00340 192 SUPERFAMILY Flavoproteins 1 189 IPR029039 -
Bpe08g00340 192 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 1 191 - -
Bpe08g00340 192 Pfam NADPH-dependent FMN reductase 55 133 IPR005025 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00340 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - mnt:21388481 337.806
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe01g00409 Bpe08g00340 CCT
Bpe01g00409 Bpe08g00340 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00340 Bpe-Chr8:2024600 Bpe09g00207 Bpe-Chr9:1468532 6.27E-115 dispersed
Bpe01g00377 Bpe-Chr1:2369079 Bpe08g00340 Bpe-Chr8:2024600 1.14E-126 wgd
Bpe03g00814 Bpe-Chr3:28114596 Bpe08g00340 Bpe-Chr8:2024600 1.17E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g3 . . . . Bpe01g00409 . Bma14g00744 . . . . . . . . Cpe05g00576 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe08g00340 . . Bma11g00387 Sed01g3430 . . . . . . . . Bhi10g00491 Tan07g0561 Cmetu05g1769 . Hepe08g0006 . . Cla03g01411 Cam03g1491 Cec03g1529 Cco03g1523 Clacu03g1514 Cmu03g2071 Cre03g1743 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001002 3 2 2 5 4 3 4 2 3 2 2 2 4 2 2 4 2 3 2 3 2 2 2 3 3 3 2 3 3 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00340 Bpe_Chr08 FPKM 2.321755 2.123474 1.994687 2.041492 4.986798 5.476705 4.598462 1.496107 1.776044 1.614007