Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00441 TTGCATACTTTTATGGCTTCTTATTCAGACGGTAGTCAGGCTGATGACCAGCAAAAACACGCTGAATCTGAGAACTGGTCTTCATCTCCGCCGACTGGAGTGTCTCATCATGGCATTTCAAATCCAAATCAGTATACAATGCCTTCGCAACTTGGAATGGGTCATGCAATGGCACCATCGACTTATCCATATCACGATCCTTACTACAGAAGCATCTTTGCTCCCTATGATGGACAGCCACATCCTCCCCAGCCTTATGGTGGGCAACCTATGGTTCATCTCCAGTTGATGGGAATTCAGCAGGCTGGAGTGCCTTTGCCATCAGATGCGGTGGAGGAGCCTGTCTTTGTGAATGCCAAACAGTATCATGGCATCATGCGGAGGCGTCAATCTCGTGCAAAAGCAGAATCAGAAAATAAAGTTTTGAAGTCTAGAAAGCCATATTTGCACGAATCTCGGCATTTACATGCATTGAGACGAGCTAGAGGATGTGGCGGTAGGTTTCTGAAGGCGAAGGAAAACGAGAACCAATCAAATGAGTTGATGTCACGAGATGAATCACAAACCAACTTAAACCTAAACAACAACAAAAACAATCCTGCTTCCTCGGACAGTGCTTCCCAATAA 627 45.45 LHTFMASYSDGSQADDQQKHAESENWSSSPPTGVSHHGISNPNQYTMPSQLGMGHAMAPSTYPYHDPYYRSIFAPYDGQPHPPQPYGGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLKAKENENQSNELMSRDESQTNLNLNNNKNNPASSDSASQ 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2786870 2788291 + Bpe022538.1 Bpe08g00441 107317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00441 208 SMART cbf3 110 171 IPR001289 GO:0003700|GO:0006355
Bpe08g00441 208 MobiDBLite consensus disorder prediction 1 52 - -
Bpe08g00441 208 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700|GO:0006355
Bpe08g00441 208 MobiDBLite consensus disorder prediction 166 208 - -
Bpe08g00441 208 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700|GO:0006355
Bpe08g00441 208 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700|GO:0006355
Bpe08g00441 208 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700|GO:0006355
Bpe08g00441 208 MobiDBLite consensus disorder prediction 181 208 - -
Bpe08g00441 208 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677|GO:0016602
Bpe08g00441 208 MobiDBLite consensus disorder prediction 166 180 - -
Bpe08g00441 208 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 7 190 - -
Bpe08g00441 208 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 7 190 IPR001289 GO:0003700|GO:0006355
Bpe08g00441 208 MobiDBLite consensus disorder prediction 23 50 - -
Bpe08g00441 208 Gene3D - 111 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01485 Bpe-Chr4:21385317 Bpe08g00441 Bpe-Chr8:2786870 6.07E-21 dispersed
Bpe08g00276 Bpe-Chr8:1632726 Bpe08g00441 Bpe-Chr8:2786870 1.10E-31 dispersed
Bpe08g00441 Bpe-Chr8:2786870 Bpe08g01208 Bpe-Chr8:13749015 9.47E-33 dispersed
Bpe01g00483 Bpe-Chr1:2998489 Bpe08g00441 Bpe-Chr8:2786870 2.45E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21740 PF02045 CBFB_NFYA 1.60E-26 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00441 K08064 - jre:109011209 293.893