Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00441 TTGCATACTTTTATGGCTTCTTATTCAGACGGTAGTCAGGCTGATGACCAGCAAAAACACGCTGAATCTGAGAACTGGTCTTCATCTCCGCCGACTGGAGTGTCTCATCATGGCATTTCAAATCCAAATCAGTATACAATGCCTTCGCAACTTGGAATGGGTCATGCAATGGCACCATCGACTTATCCATATCACGATCCTTACTACAGAAGCATCTTTGCTCCCTATGATGGACAGCCACATCCTCCCCAGCCTTATGGTGGGCAACCTATGGTTCATCTCCAGTTGATGGGAATTCAGCAGGCTGGAGTGCCTTTGCCATCAGATGCGGTGGAGGAGCCTGTCTTTGTGAATGCCAAACAGTATCATGGCATCATGCGGAGGCGTCAATCTCGTGCAAAAGCAGAATCAGAAAATAAAGTTTTGAAGTCTAGAAAGCCATATTTGCACGAATCTCGGCATTTACATGCATTGAGACGAGCTAGAGGATGTGGCGGTAGGTTTCTGAAGGCGAAGGAAAACGAGAACCAATCAAATGAGTTGATGTCACGAGATGAATCACAAACCAACTTAAACCTAAACAACAACAAAAACAATCCTGCTTCCTCGGACAGTGCTTCCCAATAA 627 45.45 LHTFMASYSDGSQADDQQKHAESENWSSSPPTGVSHHGISNPNQYTMPSQLGMGHAMAPSTYPYHDPYYRSIFAPYDGQPHPPQPYGGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLKAKENENQSNELMSRDESQTNLNLNNNKNNPASSDSASQ 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2786870 2788291 + Bpe022538.1 Bpe08g00441 107317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00441 208 SMART cbf3 110 171 IPR001289 GO:0003700|GO:0006355
Bpe08g00441 208 MobiDBLite consensus disorder prediction 1 52 - -
Bpe08g00441 208 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700|GO:0006355
Bpe08g00441 208 MobiDBLite consensus disorder prediction 166 208 - -
Bpe08g00441 208 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700|GO:0006355
Bpe08g00441 208 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700|GO:0006355
Bpe08g00441 208 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700|GO:0006355
Bpe08g00441 208 MobiDBLite consensus disorder prediction 181 208 - -
Bpe08g00441 208 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677|GO:0016602
Bpe08g00441 208 MobiDBLite consensus disorder prediction 166 180 - -
Bpe08g00441 208 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 7 190 - -
Bpe08g00441 208 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 7 190 IPR001289 GO:0003700|GO:0006355
Bpe08g00441 208 MobiDBLite consensus disorder prediction 23 50 - -
Bpe08g00441 208 Gene3D - 111 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00441 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - jre:109011209 293.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01485 Bpe-Chr4:21385317 Bpe08g00441 Bpe-Chr8:2786870 6.07E-21 dispersed
Bpe08g00276 Bpe-Chr8:1632726 Bpe08g00441 Bpe-Chr8:2786870 1.10E-31 dispersed
Bpe08g00441 Bpe-Chr8:2786870 Bpe08g01208 Bpe-Chr8:13749015 9.47E-33 dispersed
Bpe01g00483 Bpe-Chr1:2998489 Bpe08g00441 Bpe-Chr8:2786870 2.45E-119 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe01g00318 BCT,CCT,ECH 4 130 CCAAT-HAP2 Transcription Factor Family AT5G12840 63.8 4.9e-42 168.3
Bpe01g00318 BCT,CCT,ECH 3 126 CCAAT-HAP2 Transcription Factor Family AT3G20910 67.2 7.8e-41 164.5
Bpe08g00276 BCT,CCT,ECH 105 259 CCAAT-HAP2 Transcription Factor Family AT3G20910 57.1 1.5e-39 160.2
Bpe01g00483 . 62 172 CCAAT-HAP2 Transcription Factor Family AT2G34720 73.9 6.1e-40 160.6
Bpe08g00441 . 58 172 CCAAT-HAP2 Transcription Factor Family AT2G34720 68.7 2.6e-38 155.2
Bpe01g00483 . 8 174 CCAAT-HAP2 Transcription Factor Family AT1G30500 61.7 1.9e-48 189.1
Bpe08g00441 . 9 175 CCAAT-HAP2 Transcription Factor Family AT1G30500 61.1 9.2e-48 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21740 PF02045 CBFB_NFYA 1.60E-26 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00441 Bpe_Chr08 FPKM 11.04796 11.633133 0.298451 0.0 8.542066 9.865714 9.364312 0.0 0.0 0.0