Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00483 ATGATCGCCATTACTGCCTCTGAAGTCTTACGTCACACAGACGCGTTCGTCTCCGATGTTCTTTCTCGGTCCGAACTCCGGCGAAATCTTGTCTCTGTTTTCCGTTGTAAATCTCCTCCCTCGGATGGAATTTCTCTCAAACCGCTCAAACTCGCAGCTGAGGCTCTCGAAAATGCTATTTCTAATGATAATCCCTCCATCGTTAGATCTTCTCTTCGTCTGGCTAAAAAACTTCTCCTCTCTTGTCGTGATACCTCCTTTTCTTCCTTTCTCCTAGCTCTTGTTTACGGCCTCAGCGATGAGTATAAAAATGCCGCCTCAAGCCTCCTCGATATATTCTATTTTGATCCTACGTTGGCTAGGTCTGAAATAGCTCCGACTATTTTCGAAGAACTGTTTCTAGTCCACCTTCTCTCCGTATTTCACTGCTTCAACGAACAAAGATCAAAAATAGGCGCATCTGCGCCACTGATTTCGAATTTCGACAGTGATAACTCCACAGATTTCGAAGTCTCAGTGGTTTTCCCTAGTACGAAATCGCTGTCAAAGATGAGCAGTGATCAGGCCTCGGAGCTAAAGGAACTGGAACACAAATATGAGGAGGTTCTGAACGAGAACTGTAGGATTTTCGCAAACTATTTCAAAAACGTTCTCGCGAACAAAGATGAGACGAAGCTGATTAATCCGCCATTGGTGATTCTGGAAAGCTCTGGGAAAAATGAAAAGTTGGCGAGCAGTGAACCCGTAAATGTCAAAACAGAGGAGCTCGGATTTAGCGCAAGACGGTATAATCCAATATGGACTGAAGAGGAAACGTCTGCGGATATCTACAGCAGCAAATCCAAGTACATTCCCTTTCGTCCCCAAAGAGTTTCTCCTAACGTCCTCGAATACCAGCAATCGTCCAGAGCGGCGGCACCATCGACGAAAGGAAATTCAAATTTGGACAGTGAAGATGACTCTTTATCCTATGAAGCTCCAACCCAGTGTTTTTCTTCAGATTCTGAAGCTGAAACCGAGGTTTTTACTCAGAACAGACATGAACAGAATATACTTCACGCTCCACTGATGGTGATTAAGTCTTTTTTTAATGTTGTATCCTTAGGTCCTTTAATGGCGAATTCTGATAACCCACCTGGTAGAGGAAAACAAACACCTCCGAAGGATTTTGTATGTCCCATAACTAGCAATTTGTTTGATGATCCAGTGACTCTTGAGACGGGTCAGACGTATGAGCGGAAAGCCATCCGAGAATGGCTTGACAGAGGAAACGCTACATGTCCAATAACGAGACAAAAGCTACTGAGTTCCCAACTGCCAAAAACAAACTATGTGCTCAAACGGCTTATTGCAAGCTGGAAAGAGGAGAACTCTATGTTGATCTCAAACAATGCCCAAAATTCTCAAACGATTGAACAACAGATTAAGTCCATAGAGCCATTGATTTCTCCTAACAGTGTTTTAAACCAAGTCACCATCGATGGTAATATGAATGAGTTAAGAAGAGCAATCAACCGACTTACTGCATCAGATATTTTGGAAGAGACAGAATCCGCAGTTCTTTGTATTCAACGAGTATGGCAGGAAGCGAATGTAGAAGATGGTATTAGAGTTATGCTCTCAAAGGCTCCAGTCATCAATGGATTTGTAGAGATCCTTTTCAATTCTGTTGATCCTCAAGTGCTAAAAGCAACTATTTTTCTCCTTTCAGAGCTGGGGTCTAAAGAGAAGGCCGTTATTCAAACTCTTACCAGGGTTGAGTCTGATGTGGATTGTTTGGTGGCTCTTTTCAAAAAGGGGTTACTGGAGGCTGTTGTTCTGATCTATCTTTTAGTACCTTCCCCCGCGAGTCTAATTGAGATGGACATGGCGGATTCTCTGTTGAAAGTTATTAAGAAGAGAGAAGAAGACTCGCTTGCGATGCATTTGAAACCCCGAACTGCTGCTGTAATTTTGTTGAGACAGATTCTTGGAAACTGTGAGGACAATCATCTCTCTTCAATTATCAATGCTATAATATCTGAAAGGGCAATTGAAAGTATTGTTGGTAGTCTACAAGCAGATTGGGCAGAAGAGAAGATTTCAGCAGTTGGGATATTACTAAGATGCATCCGAAAGGATGGAAAATGCAGAAACGTTATCGCTGATAATGCAGAACTGGGTCCTGTTTTGGAATGTTTCATGAGTGCAAGTGATGAAGAAAGATATGAGATAGTACAGTTTCTTTCCGAGTTAGTCAAGCTAAATAGGCAAGTGAGGACTTCCAATGAGCAAATTCTCCATATCATAAAGGATGAAGGTTACTACAGTACAATGCACGCACTTTTGATGTATTTACAGACTGCCAACCTAGATCAAAGTCCAGTTGTGGCTGGTCTGCTTTTACAGCTAGATCTTCTGGCCGAGCCAAGAAAAATGAGCATATACCGCGAAGAGGCAATAGATGCTCTCATTTCATGCCTCAGAAATTCGAACCACCTAAGTGGCCAAGTCGCTGCAGCTGAGACAATTATGTCTTTACAAGGCAGATTTTGCTCCTCGGGAAAGTCTATTACTAGGGCTTTTCTTCTTAAATGTGCTGGACTTGACAAGAGTTACAAGAAGCTGATGCGAAGAGAAAATCCCAGCAATGTCCCTGGGGAAGTAAAAGAAACTGCAGAAGAAGAGAAGGTAGCTGATGAATGGGAAAGCAAAATGGCATTTGTTCTAGTGAATCATGAGTTTGGTTTGCTGTTTGAGGCTTTGGTCGATGGCTTCAAGAGCAAATATGAGGCATTTTATTCAGCATCTTTTGTCTCAGCTACATGGCTCACATATATGCTTAAATTTCTTCCTGATACTGGAGTACAAGGGGCTGCTCGAGTCTGCTTGCTTAAGCCCTTTATATCAGTATTCACATCTACGAAGGATATTGAAGACAAAATGCTTGCTTTGCTGGCTATAAACAGTTTTATCCGAGACCCTGAAGGGGTGCAGGACATTACTCCCTACTTGAAAGATATTATGAGAGGTCTCAGAGAACTTAAAAAATCTTCACCCTTGGCTTCTGAAATACAAAAGGTTCTTTCAGATGGACATGACTCTAGCACTGAATTGTGGAGCCATAAAGAGTTAGTTCAAGTAGACTGTAGCGAGAATGGAGAAGTGCTTTCTCTTGTTTACTACAAAGACAAGATTTTTTCTGGCCATTCAGATGGAACTATCAAGGTCTGGACTGGTAGAGGTAGCATTCTTCATCTTGTACAAGAAATCCAGGAGCACTCCAAAGCAGTCACGAGCTTAGCTGTTTCGGAATCAGCAGAGATATTATACAGCGGCTCACTTGATAGAACAGTGAAAGTCTGGTCAATTGGAGATGATATCGTCAATTTGTTACAAGTTCATGATTTGAAGGATCAGGTTCATCAGATAGTCATCGCCAAGAGTCTCGTGTGCTTCATTCCACAAGGGGCTGGTGTTAAGGTTCATTCACTGGAAGGAGAATCTAAACTATTGAATGCAAGCAAACACGCCAAGTGCTTGGCTCTCCAAAGAGGAAAACTATACTGTGGATGCCATGATAATAGTATTCAGGAGATCGATTTGGCTACAGGAACATTATGCTCAATTCAAAATGGTTCAAGAAAACTGTTGGGAAAATCAACTCCTGTTCAAGCTCTAGAAGTTCACGATGGACTCTTATATTCAGCCAGTTGTTCCTTGGATGGAGCAGCCGTGAAGATTTGGGATGCATCAAATCACATCCTTATTGGATCTTTGCCAACCTCGTCGGATGTGCGGAGAATGGCTATAAGCTCAGATCTGGTTTATTTAGGGTGCAAGGGAGGAAGTGTGGAAGTTTGGAGCAGAGAGAAGCAAAATAGATTAGAAATACTACAAACTGTGAGAAATTGCAAGGTTATGAGCATGGCTCTTGACGATGACGAAGACATTTTGGTCGTAGGAACTTCAGATGGCTTGATTCAGGTACAATTACCTTTTATGCTCAAAACTCTCTTTATACATGAACCATAA 4014 42.1 MIAITASEVLRHTDAFVSDVLSRSELRRNLVSVFRCKSPPSDGISLKPLKLAAEALENAISNDNPSIVRSSLRLAKKLLLSCRDTSFSSFLLALVYGLSDEYKNAASSLLDIFYFDPTLARSEIAPTIFEELFLVHLLSVFHCFNEQRSKIGASAPLISNFDSDNSTDFEVSVVFPSTKSLSKMSSDQASELKELEHKYEEVLNENCRIFANYFKNVLANKDETKLINPPLVILESSGKNEKLASSEPVNVKTEELGFSARRYNPIWTEEETSADIYSSKSKYIPFRPQRVSPNVLEYQQSSRAAAPSTKGNSNLDSEDDSLSYEAPTQCFSSDSEAETEVFTQNRHEQNILHAPLMVIKSFFNVVSLGPLMANSDNPPGRGKQTPPKDFVCPITSNLFDDPVTLETGQTYERKAIREWLDRGNATCPITRQKLLSSQLPKTNYVLKRLIASWKEENSMLISNNAQNSQTIEQQIKSIEPLISPNSVLNQVTIDGNMNELRRAINRLTASDILEETESAVLCIQRVWQEANVEDGIRVMLSKAPVINGFVEILFNSVDPQVLKATIFLLSELGSKEKAVIQTLTRVESDVDCLVALFKKGLLEAVVLIYLLVPSPASLIEMDMADSLLKVIKKREEDSLAMHLKPRTAAVILLRQILGNCEDNHLSSIINAIISERAIESIVGSLQADWAEEKISAVGILLRCIRKDGKCRNVIADNAELGPVLECFMSASDEERYEIVQFLSELVKLNRQVRTSNEQILHIIKDEGYYSTMHALLMYLQTANLDQSPVVAGLLLQLDLLAEPRKMSIYREEAIDALISCLRNSNHLSGQVAAAETIMSLQGRFCSSGKSITRAFLLKCAGLDKSYKKLMRRENPSNVPGEVKETAEEEKVADEWESKMAFVLVNHEFGLLFEALVDGFKSKYEAFYSASFVSATWLTYMLKFLPDTGVQGAARVCLLKPFISVFTSTKDIEDKMLALLAINSFIRDPEGVQDITPYLKDIMRGLRELKKSSPLASEIQKVLSDGHDSSTELWSHKELVQVDCSENGEVLSLVYYKDKIFSGHSDGTIKVWTGRGSILHLVQEIQEHSKAVTSLAVSESAEILYSGSLDRTVKVWSIGDDIVNLLQVHDLKDQVHQIVIAKSLVCFIPQGAGVKVHSLEGESKLLNASKHAKCLALQRGKLYCGCHDNSIQEIDLATGTLCSIQNGSRKLLGKSTPVQALEVHDGLLYSASCSLDGAAVKIWDASNHILIGSLPTSSDVRRMAISSDLVYLGCKGGSVEVWSREKQNRLEILQTVRNCKVMSMALDDDEDILVVGTSDGLIQVQLPFMLKTLFIHEP 1337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3134698 3141411 - Bpe022581.1 Bpe08g00483 107359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00483 1337 SUPERFAMILY ARM repeat 487 1007 IPR016024 -
Bpe08g00483 1337 SUPERFAMILY RING/U-box 380 460 - -
Bpe08g00483 1337 Pfam WD domain, G-beta repeat 1081 1116 IPR001680 GO:0005515
Bpe08g00483 1337 MobiDBLite consensus disorder prediction 298 336 - -
Bpe08g00483 1337 CDD RING-Ubox_PUB 390 432 IPR045210 -
Bpe08g00483 1337 Pfam U-box domain 387 458 IPR003613 GO:0004842|GO:0016567
Bpe08g00483 1337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 474 IPR013083 -
Bpe08g00483 1337 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1323 - -
Bpe08g00483 1337 SMART Ubox_2 389 453 IPR003613 GO:0004842|GO:0016567
Bpe08g00483 1337 ProSiteProfiles Trp-Asp (WD) repeats profile. 1084 1117 IPR001680 GO:0005515
Bpe08g00483 1337 Gene3D - 1012 1153 IPR015943 GO:0005515
Bpe08g00483 1337 Gene3D - 1154 1324 IPR015943 GO:0005515
Bpe08g00483 1337 SMART WD40_4 1035 1072 IPR001680 GO:0005515
Bpe08g00483 1337 SMART WD40_4 1288 1325 IPR001680 GO:0005515
Bpe08g00483 1337 SMART WD40_4 1077 1116 IPR001680 GO:0005515
Bpe08g00483 1337 SMART WD40_4 1197 1243 IPR001680 GO:0005515
Bpe08g00483 1337 SMART WD40_4 1246 1282 IPR001680 GO:0005515
Bpe08g00483 1337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1084 1117 - -
Bpe08g00483 1337 SUPERFAMILY WD40 repeat-like 1041 1323 IPR036322 GO:0005515
Bpe08g00483 1337 ProSiteProfiles U-box domain profile. 385 460 IPR003613 GO:0004842|GO:0016567
Bpe08g00483 1337 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1323 - -
Bpe08g00483 1337 Coils Coil 185 205 - -
Bpe08g00483 1337 Gene3D - 495 876 IPR011989 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g02054 Bpe08g00483 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00344 Bpe-Chr2:2266431 Bpe08g00483 Bpe-Chr8:3134698 2.19E-14 dispersed
Bpe05g00830 Bpe-Chr5:21560373 Bpe08g00483 Bpe-Chr8:3134698 2.34E-76 dispersed
Bpe08g00483 Bpe-Chr8:3134698 Bpe11g01045 Bpe-Chr11:7795193 5.95E-43 dispersed
Bpe08g00483 Bpe-Chr8:3134698 Bpe11g00764 Bpe-Chr11:5755923 2.37E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00483 - - mesc:110604262 1568.52